TE_16398
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 270.50 |
| Counts of samples | TCGA_tumor:239; TCGA_normal:0; GTEx:0 |
| TSS | chr7(-):146906175 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_16398.11 | - | Intergenic | Non-coding | Non-coding | chr7(-):146870465,146870485,146872118,146872224,146878201,146878291,146899296,146899418,146900780,146900888,146903607,146903704,146906050,146906176 |
| teRNA_16398.12 | - | Intergenic | Non-coding | Non-coding | chr7(-):146890284,146890304,146899296,146899418,146900780,146900888,146903607,146903704,146906050,146906176 |
| teRNA_16398.13 | - | Intergenic | Non-coding | Non-coding | chr7(-):146899413,146899433,146900780,146900888,146903607,146903704,146906050,146906176 |
| teRNA_16398.14 | - | Intergenic | Non-coding | Non-coding | chr7(-):146892339,146892359,146899296,146899418,146900780,146900888,146903607,146903704,146906050,146906176 |
| teRNA_16398.15 | - | Intergenic | Non-coding | Non-coding | chr7(-):146878271,146878291,146899296,146899418,146900780,146900888,146903675,146903704,146906050,146906176 |
| teRNA_16398.16 | - | Intergenic | Non-coding | Non-coding | chr7(-):146899398,146899418,146900780,146900888,146903590,146903704,146906050,146906176 |
| teRNA_16398.17 | - | Intergenic | Non-coding | Non-coding | chr7(-):146903684,146903704,146905387,146905522,146906050,146906176 |
| teRNA_16398.18 | - | Intergenic | Non-coding | Non-coding | chr7(-):146878271,146878291,146899296,146899418,146900780,146900888,146906050,146906176 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
