TE_15271
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1PB1_3end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | -, ESR1 |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 175.83 |
| Counts of samples | TCGA_tumor:155; TCGA_normal:0; GTEx:0 |
| TSS | chr6(+):151643391 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15271.1 | - | Intergenic | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151662596,151662616 |
| teRNA_15271.2 | ESR1 | Chimeric | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151656655,151656763,151701875,151702005,151807843,151807863 |
| teRNA_15271.3 | ESR1 | Chimeric | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151701875,151702005,151807843,151807863 |
| teRNA_15271.4 | ESR1 | Chimeric | Other | MTMTLHTKASGMALLHQIQGNELEPLNRPQLKIPLERPLGEVYLDSSKPAVYNYPEGAAYEFNAAAAANAQVYGQTGLPYGPGSEAAAFGSNGLGGFPPLNSVSPSPLMLLHPPPQLSPFLQPHGQQVPYYLENEPSGYTVREAGPPAFYRPNSDNRRQGGRERLASTNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGDMRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEH | chr6(+):151643392,151644013,151651697,151651796,151701875,151702005,151807843,151808364,151842597,151842787,151880655,151880771,151944173,151944508,152011656,152011794,152060991,152061124,152094385,152094568,152098732,152098752 |
| teRNA_15271.5 | - | Intergenic | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151687589,151687609 |
| teRNA_15271.6 | ESR1 | Chimeric | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151666390,151666448,151701875,151702005,151807843,151807863 |
| teRNA_15271.7 | ESR1 | Chimeric | Other | MTMTLHTKASGMALLHQIQGNELEPLNRPQLKIPLERPLGEVYLDSSKPAVYNYPEGAAYEFNAAAAANAQVYGQTGLPYGPGSEAAAFGSNGLGGFPPLNSVSPSPLMLLHPPPQLSPFLQPHGQQVPYYLENEPSGYTVREAGPPAFYRPNSDNRRQGGRERLASTNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGDMRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEH | chr6(+):151643392,151644013,151651697,151651796,151666390,151666448,151701875,151702005,151807843,151808364,151842597,151842787,151880655,151880771,151944173,151944508,152011656,152011794,152060991,152061124,152094385,152094568,152098732,152098752 |
| teRNA_15271.8 | - | Intergenic | Non-coding | Non-coding | chr6(+):151643392,151644013,151651697,151651796,151666390,151666448,151687589,151687609 |
| teRNA_15271.9 | - | Intergenic | Non-coding | Non-coding | chr6(+):151643392,151644013,151649880,151649977,151651697,151651796,151662596,151662616 |
| teRNA_15271.10 | - | Intergenic | Non-coding | Non-coding | chr6(+):151643392,151644013,151649126,151649146 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
