TE_13929
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | ENSG00000287616, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 181.46 |
| Counts of samples | TCGA_tumor:160; TCGA_normal:0; GTEx:0 |
| TSS | chr6(-):104489779 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_13929.1 | ENSG00000287616 | Chimeric | Non-coding | Non-coding | chr6(-):104487568,104487588,104487907,104488189,104489653,104489780 |
| teRNA_13929.2 | ENSG00000287616 | Chimeric | Non-coding | Non-coding | chr6(-):104487568,104487588,104487907,104488189,104489738,104489780 |
| teRNA_13929.3 | ENSG00000287616 | Chimeric | Non-coding | Non-coding | chr6(-):104487568,104487588,104489242,104489780 |
| teRNA_13929.4 | ENSG00000287616 | Chimeric | Non-coding | Non-coding | chr6(-):104487568,104487588,104487907,104488189,104489242,104489780 |
| teRNA_13929.5 | - | Intergenic | Non-coding | Non-coding | chr6(-):104488169,104488189,104489242,104489780 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
