TE_13369
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | SVA_D |
|---|---|
| TE superfamily | SVA |
| TE class | Retroposon |
| Gene | DTNBP1, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 161.17 |
| Counts of samples | TCGA_tumor:142; TCGA_normal:0; GTEx:0 |
| TSS | chr6(-):15726947 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_13369.1 | - | Intergenic | Non-coding | Non-coding | chr6(-):15695419,15695439,15722720,15722794,15726629,15726948 |
| teRNA_13369.2 | - | Intergenic | Non-coding | Non-coding | chr6(-):15718427,15718447,15722720,15722794,15726629,15726948 |
| teRNA_13369.3 | - | Intergenic | Non-coding | Non-coding | chr6(-):15695419,15695439,15722756,15722794,15726629,15726948 |
| teRNA_13369.4 | DTNBP1 | Chimeric | Non-coding | Non-coding | chr6(-):15523199,15523219,15524526,15524669,15533240,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15651313,15651363,15652087,15652140,15722720,15722794,15726629,15726948 |
| teRNA_13369.5 | DTNBP1 | Chimeric | Non-coding | Non-coding | chr6(-):15523199,15523219,15524526,15524669,15533240,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15651313,15651408,15652087,15652140,15722720,15722794,15726629,15726948 |
| teRNA_13369.6 | DTNBP1 | Chimeric | Non-coding | Non-coding | chr6(-):15523199,15523219,15524526,15524669,15533240,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15652087,15652140,15722720,15722794,15726629,15726948 |
| teRNA_13369.7 | DTNBP1 | Chimeric | Other | MLSAHWEKKKTSLVELQEQLQQLPALIADLESMTANLTHLEASFEEVENNLLHLEDLCGQCELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERRGDP* | chr6(-):15523199,15523219,15524526,15524667,15533236,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15652087,15652140,15722720,15722794,15726629,15726948 |
| teRNA_13369.8 | DTNBP1 | Chimeric | Other | MLSAHWEKKKTSLVELQEQLQQLPALIADLESMTANLTHLEASFEEVENNLLHLEDLCGQCELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERRGDP* | chr6(-):15523199,15523219,15524526,15524667,15533236,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15651313,15651363,15652087,15652140,15722720,15722794,15726629,15726948 |
| teRNA_13369.9 | DTNBP1 | Chimeric | Non-coding | Non-coding | chr6(-):15524649,15524669,15533240,15533395,15593059,15593081,15615267,15615399,15627343,15627475,15637744,15637804,15651313,15651363,15652087,15652140,15722720,15722794,15726629,15726948 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
