TE_122
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSp |
|---|---|
| TE superfamily | Alu |
| TE order | SINE |
| Gene | PRAMEF18, PRAMEF19 |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 4.51 |
| Counts of samples | TCGA_tumor:23; TCGA_normal:0; GTEx:5 |
| TSS | chr1(-):13375126 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_122.1 | PRAMEF19 | Chimeric | Other | MSFQAPRRLLELAGQSLLRDQALAISVLDELPRELFPRLFVEAFTSRCCEVLKVMVQAWPFPCLPLGSLMKTPDLEILHYVVDGIDCLLAQKVRPRRWKLQVLEMRDVDENFWTIWSGARPLSCSPEAMSKRQTVEDCPRTGEKQPLKVFMDVCLKEKSVDEDLSFFSGWVQHRRRSVHLCCTKVVNYSMNILNFRNILETVYPDSIQVLEIWNMCWPCMVAEVSRYLSQMKNLRKLFISDGCGYLPSFESQGQLVAEFSSVFLRLEYLQMLYMRRIRFFEGYLDQLIRCLKSPL | chr1(-):13369620,13369640,13370649,13371227,13371614,13371910,13374885,13375127 |
| teRNA_122.2 | PRAMEF18 | Chimeric | Other | MSFQAPRRLLELAGQSLLRDQALAISVLDELPRELFPPLFVEAFTSRRCEVLKVMVQAWPFPCLPLGSLMKTPDLEILHYVVDGIDCLLAQKVRPRRWKLQVLEMRDVDENFWTIWSGARLLSCSPEAMSKRQTVEDCPRTGEKQPLKVFMDVCLKEKFMDEDLSFFSGWVQHRRGSVHLCCTKVVNYSMSILNFRNILETVYPDSIQVLEIWNMCWLCMIVEFSRYLSQMRNLRKLFISDGCRYLLSSDSQEQLVAEFSSVLLRLENLQMLYVRRVCFFRGHLDQLIRCLRSPL | chr1(-):13223885,13223905,13224855,13225433,13225820,13226116,13374885,13375127 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
