TE_1202
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJr |
|---|---|
| TE superfamily | Alu |
| TE order | SINE |
| Gene | GPATCH4, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.06 |
| Counts of samples | TCGA_tumor:21; TCGA_normal:1; GTEx:408 |
| TSS | chr1(-):156617093 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_1202.11 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156598299,156598319,156598968,156599104,156616980,156617094 |
| teRNA_1202.12 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156598299,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
1
2
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
