TE_12012
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | -, FBXO38-DT |
| Class | Chimeric, Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 279.52 |
| Counts of samples | TCGA_tumor:247; TCGA_normal:0; GTEx:0 |
| TSS | chr5(-):148230987 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_12012.1 | - | Intergenic | Non-coding | Non-coding | chr5(-):148200953,148200973,148230596,148230714,148230884,148230988 |
| teRNA_12012.2 | - | Intergenic | Non-coding | Non-coding | chr5(-):148206095,148206115,148230596,148230714,148230884,148230988 |
| teRNA_12012.3 | FBXO38-DT | Chimeric | Non-coding | Non-coding | chr5(-):148089783,148089803,148093582,148093742,148230596,148230714,148230884,148230988 |
| teRNA_12012.4 | FBXO38-DT | Chimeric | Non-coding | Non-coding | chr5(-):148089783,148089803,148093582,148093742,148200917,148200973,148230596,148230714,148230884,148230988 |
| teRNA_12012.5 | - | Intergenic | Non-coding | Non-coding | chr5(-):148225737,148225757,148230596,148230714,148230884,148230988 |
| teRNA_12012.6 | FBXO38-DT | Chimeric | Non-coding | Non-coding | chr5(-):148089783,148089803,148093582,148093742,148100437,148100597,148230596,148230714,148230884,148230988 |
| teRNA_12012.7 | - | Intergenic | Non-coding | Non-coding | chr5(-):148226079,148226099,148230596,148230714,148230884,148230988 |
| teRNA_12012.8 | - | Intergenic | Non-coding | Non-coding | chr5(-):148192426,148192446,148200917,148200973,148230596,148230714,148230884,148230988 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
