TE_11958
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSq4 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 182.59 |
| Counts of samples | TCGA_tumor:161; TCGA_normal:0; GTEx:0 |
| TSS | chr5(-):139546197 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_11958.1 | - | Intergenic | Non-coding | Non-coding | chr5(-):139538052,139538072,139542410,139545805,139546126,139546198 |
| teRNA_11958.2 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139532801,139532821,139534030,139545805,139546126,139546198 |
| teRNA_11958.3 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139536193,139536213,139536478,139538238,139539278,139545805,139546126,139546198 |
| teRNA_11958.4 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139539685,139539705,139540034,139545805,139546126,139546198 |
| teRNA_11958.5 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139536161,139536181,139539107,139545805,139546126,139546198 |
| teRNA_11958.6 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139536584,139536604,139536739,139545805,139546126,139546198 |
| teRNA_11958.7 | - | Intergenic | Non-coding | Non-coding | chr5(-):139532272,139532292,139533897,139536604,139536739,139538072,139542410,139545805,139546126,139546198 |
| teRNA_11958.8 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139532272,139532292,139533897,139536919,139537705,139541858,139543056,139545805,139546126,139546198 |
| teRNA_11958.9 | - | Intergenic | Non-coding | Non-coding | chr5(-):139536584,139536604,139537603,139538072,139542410,139545805,139546126,139546198 |
| teRNA_11958.10 | - | Intergenic | Other | MPGPPAFFFSSKQSLTLWPRLEYNGQISVHCNLHLSGSSDSPASASQVARITGTCYHAQLIFVFLVETVFHHVGQAALELMTSNNPPALASQRVGITGMSYRAQLHPDFFFFETEFCSCRPGWSAVARSRLTATSTSRFKQFSCLSLPSSWDYRCLPPCPANFFCIFSRDRVLPCWAGCSRTPDLR* | chr5(-):139525899,139525919,139531141,139535114,139537156,139544244,139544402,139545805,139546126,139546198 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
