hAT-1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001293 |
|---|---|
| TE superfamily | Tag1 |
| TE class | DNA |
| Species | Monotremata,Theria_mammals |
| Length | 3469 |
| Kimura value | 32.43 |
| Tau index | 0.0000 |
| Description | hAT-Tag1 DNA transposon, hAT-1_Mam subfamily |
| Comment | 23 bp TIRs. Near-identical to hAT-1_AMi, which was active in the ancestor of all crocodiles. ORF 1007-2917 encodes a transposase related to other Tag1-group hAT tranposases, like hAT-13_AMi_tp and HAT-25_SM_tp. Occasionally found at orthologous places in marsupial and eutheria. There are copies in platypus, but it is unclear that they are at orthologous sites |
| Sequence |
AAATGTAAAGGCCCGGGAAAAAATCACGGAATAATNNGGGAAAAAAATANNCTTTCCCCTTCTTCTCCGAAGAGTTTTTTGCCCTNTTTCCNNNAAAAATCGGAAAAATTGAAAATTTTTNGAAAAATTAGAAAANTTTGGATTATGAANTNTTTTAGAATGATGAATAAAATGTTTAAGATAAGGTGTTCATATATTGCTACCTGGCCTTTACTCCCCCAAAATGATTTCTAAAAACTATGCAATAGGAAGATTTTTATGTAAAACTATCTACAGTATCAGATCATTACAATTCCTGTACACTGAGGACAAGCAGTACAGTACAACTCTCAAATGCAAGAGCAAGATGCATTTCTGCCTCCAGGGGGCACTGCCATTTTCACAAGAGAAGGAAGAAGGATTCAGTGCCTTCTTTGCTTGTGGGCTTCCTCTTGTTGACTTTTGATCTAGAGGTTGGTGGATATGTTCCTGTCCTCCTGACTAGGCCTCAAAGGACCGGGAGTGGAGTGGACACTGGCAGTAGCATCCATTTATTCCTGTAGAGATTAGAAACAAGGAGCTTATTGCCCTGCTTGCTCAAAAGGCTCAGGACAGAGAGAAGTAAGAGCAAGTCTAAAGGTTTTGGAGTTGGAAGGAAGTTGGAACCTGGCTCCTCCTGGCCCTGTGACCTTGAGATCCACAAAGGAGCTGAAAGAAAGTATACTTCTTTATTGAAAGGTAAGAGTTTAAATTTATCTGAATTCAGAATATTAAACTATATTTTAGCTGCATTAGCATATTTTCATAACCTATGTAAATCATAATTGAATTCCTACTAATCCGATGTTTTGTGGCAAAATCACCTACCCAACCTTAGCAGTGAGGTGAGGCCTGCAGGGCTGGAAAGTTGTTTACAGTTAACTCTGAGGAGACGCCATTACTAAATTTGTACATGCTGTAGCTTAGTGTTTATATGCAAGCTAGCCACTAAACTACATTTTTCCTTTTTTCTCCCTTCAGCAAAATGGTGAGACCAACTTCTAGCATATGGAAGCATTTCCACACTGCAAGTTATTCTGAGGGGGGAAAANACGTGATTTGCAAATACTGTCAAATGAAATATGCATTTCCAAATGCTACTAGGATGACCAAACACATCCTTGTATGTAAGAAGTGTCCTGCAGACATTAAAAAATCCTTCATGGGTATAAGTGAGGAGGACCACGATGAAGAAAGTGCAAGTAGCTCTTTCCAGCGTTCTCGATCCAGAAGTCCTCCTGCTGCTGCTTCTGTAACATCAGCATCATCACAAAGGGTTGCCCAATCAACATCCTCGAGTAACCAAATACTGCAAGCAACTGTATACAAAAAACTCTCAATGGCTTCATTTGTAGACAAGATGACACCTGAAGATCAGGAAAAAATTGACCAAGCTCTTGCAAGAGCAATATATTCTTCTGGAACGCCACTGTCAATAACTGAAAATGCATACTGGCAGGAAGTTTTTAAATTACTAAGACCATCATACCGTTTGCCCAGCAGACATTCTTTGAGCAAGCCTCTTTTAGAGTCAGAATATGAACGGGTAATGGAATCTGTGCAAGGAAGAATCAATGAAGCACTGTGTCTTGCAGTACTTACAGATGGATGGACAAATGTGCGGGGAGAAGGAATCATAAACTTTGTGATAACAACACCTCAACCAGTTTTTTACAGAAGCATTGAAACAGGAGAGAACAGACACACTGCAGAGTATATCAGTTGTAAAATATGTGAAGTCCTACAGAAGACAGGGAGCGGTAAAGTATTTGCTTTGCTGACTGACAATGCAAGTAACATGAAAGCAGCATGGGAGATCATAACGGATAAATANCCACATATTACTGCAATAGGATGTGCATCCCATGGCCTAAACTTGCTTCTTAATGACATCATGAAGTTGGACACTCTCCAAAAGATCTANAGAAGAGCAAAAGAAGTTATAAAACATGTAAAAGCTACTCATATTGTAGCTGCTGTCTTCAAGAAGAAGCAAGAAGAAAAGAATGCAAAGAATAAAATAGTGACACTGAAACTCTGTAGTAAAACTCGATGGGGTGGAGTGGTAATGTCCTTTGAGAGTTTACTAAAAAACAAAGAAGCTCTTCAAGAAACAGTAATAGTTGAGGATCTTAAAGTACCCAGAAGTGTAAGGAACACTGTACTTGATGAGGATGTCTTCTGGGTTCAACTGCAGAACTCCCTGAAGATTCTAAAGCCAATTTCTTCAGCAATCACTGCATCTGAATCAGACAGTGCACTTTTGTCAGACATTCCTTACCAAATGGCCCAGATAAAATCAACTGTTTTTGAGAATCTAAGTGTATTTCCGCTTACAAGTACAGAAGAAAGTAAAGTGAAAGACTTTATTAAGAAACGGGAAGAATTTTGTTGTCAGCCAATTCATGCTGCTGCAAATCTCTTGGATCCAAGATTCAAAGGCAGAAATGTAAGTGATGATAGCACTGCTACTGCATTTGACTGGATTACAAAACAAGCAGCACACTTAGGACTTGATGTTGGAAAGGTACTTTCAAATGTTGCAGAATACAGAACATCTTCAGGTGTTTGGTCCAGGAATGCAGTCTGGGATTCTGCCAAGCATATCCCTCCTGCAACATGGTGGCAAGGCCTTTGCACGACACAGCCTCTGACTCCTCTTGCTTCTCGCCTGCTTCAGATTCCTCCATCTTCTGCAGCATGTGAAAGAAATTGGTCTATGTTTGGAAATACTCGCACCAAATCAAGAAATAAACTAACATGTGAAAGAGTAGAGAAGCTTGTCTCAATCCGGGCAAACCTTCAGTTTTCAGAAGTCCGTGAAGATGATAAAAATGAAGCATCAGAAGAAGCAGAAACTGCTGATAGCGATAGCTCAGAAAATGAGACTGATTAGACAAAGTTCCATGTGGCAAAAGTTGTATTCAATGAGTTTGGGTTTTTTTCCTTTTTTCCCTCAGCTCCTTTTCTGAAAATGAGTGCTTTCTGTATCTGCTTGACACTGTGGAGGACACTAAGTCCAGAAAACATAATAACTTTCTTTGTTTTACTATAATGTTGATGGTTTCTTCTGTTCTCAAGTTTTTGCCTGCTTCTCATAAACTGGCAAAAACTAAGAGATGCTAGATTCCTTAAAGTTCAGCAGCTTGTAGCTCCATTTGTAACAAAAATTAAAAACATTTAAAAGTAAATTCAATTAGTAAATTTGTAATTATTGTCTGAATAAACTATACTTTTAAATTTAATATACCAAACATGATAATTTTATGAGCAAACCAAGTTATACATAATACATTTTTATGTTCCTAAACTAACAAAGTGACTTTAGATCTGTAAAGGGCGCTAAAAAAATAAGTATTGCATATATTTCAATTTTCCCCAAAATTTCCATTTTTTCCCGAAAAACGTTTTCTCCCATGGCTTCAAAATTTCCGGAAATTTTACATCTCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-1_Mam | MYB58 | 452 | 460 | - | 16.26 | CCACCAACC |
| hAT-1_Mam | INO4 | 2717 | 2725 | + | 16.24 | GCATGTGAA |
| hAT-1_Mam | INO2 | 2717 | 2725 | + | 16.20 | GCATGTGAA |
| hAT-1_Mam | WRKY24 | 433 | 443 | + | 16.17 | TGTTGACTTTT |
| hAT-1_Mam | Nr5A2 | 665 | 673 | + | 16.13 | TGACCTTGA |
| hAT-1_Mam | WRKY7 | 433 | 443 | + | 16.09 | TGTTGACTTTT |
| hAT-1_Mam | WRKY27 | 433 | 443 | + | 16.09 | TGTTGACTTTT |
| hAT-1_Mam | ZNF684 | 2071 | 2084 | - | 16.08 | CCACTCCACCCCAT |
| hAT-1_Mam | DOF3.6 | 3189 | 3209 | - | 16.02 | TTTACTTTTAAATGTTTTTAA |
| hAT-1_Mam | SOL1 | 3252 | 3266 | - | 16.00 | ATATTAAATTTAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
