hAT-1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001293 |
|---|---|
| TE superfamily | Tag1 |
| TE class | DNA |
| Species | Monotremata,Theria_mammals |
| Length | 3469 |
| Kimura value | 32.43 |
| Tau index | 0.0000 |
| Description | hAT-Tag1 DNA transposon, hAT-1_Mam subfamily |
| Comment | 23 bp TIRs. Near-identical to hAT-1_AMi, which was active in the ancestor of all crocodiles. ORF 1007-2917 encodes a transposase related to other Tag1-group hAT tranposases, like hAT-13_AMi_tp and HAT-25_SM_tp. Occasionally found at orthologous places in marsupial and eutheria. There are copies in platypus, but it is unclear that they are at orthologous sites |
| Sequence |
AAATGTAAAGGCCCGGGAAAAAATCACGGAATAATNNGGGAAAAAAATANNCTTTCCCCTTCTTCTCCGAAGAGTTTTTTGCCCTNTTTCCNNNAAAAATCGGAAAAATTGAAAATTTTTNGAAAAATTAGAAAANTTTGGATTATGAANTNTTTTAGAATGATGAATAAAATGTTTAAGATAAGGTGTTCATATATTGCTACCTGGCCTTTACTCCCCCAAAATGATTTCTAAAAACTATGCAATAGGAAGATTTTTATGTAAAACTATCTACAGTATCAGATCATTACAATTCCTGTACACTGAGGACAAGCAGTACAGTACAACTCTCAAATGCAAGAGCAAGATGCATTTCTGCCTCCAGGGGGCACTGCCATTTTCACAAGAGAAGGAAGAAGGATTCAGTGCCTTCTTTGCTTGTGGGCTTCCTCTTGTTGACTTTTGATCTAGAGGTTGGTGGATATGTTCCTGTCCTCCTGACTAGGCCTCAAAGGACCGGGAGTGGAGTGGACACTGGCAGTAGCATCCATTTATTCCTGTAGAGATTAGAAACAAGGAGCTTATTGCCCTGCTTGCTCAAAAGGCTCAGGACAGAGAGAAGTAAGAGCAAGTCTAAAGGTTTTGGAGTTGGAAGGAAGTTGGAACCTGGCTCCTCCTGGCCCTGTGACCTTGAGATCCACAAAGGAGCTGAAAGAAAGTATACTTCTTTATTGAAAGGTAAGAGTTTAAATTTATCTGAATTCAGAATATTAAACTATATTTTAGCTGCATTAGCATATTTTCATAACCTATGTAAATCATAATTGAATTCCTACTAATCCGATGTTTTGTGGCAAAATCACCTACCCAACCTTAGCAGTGAGGTGAGGCCTGCAGGGCTGGAAAGTTGTTTACAGTTAACTCTGAGGAGACGCCATTACTAAATTTGTACATGCTGTAGCTTAGTGTTTATATGCAAGCTAGCCACTAAACTACATTTTTCCTTTTTTCTCCCTTCAGCAAAATGGTGAGACCAACTTCTAGCATATGGAAGCATTTCCACACTGCAAGTTATTCTGAGGGGGGAAAANACGTGATTTGCAAATACTGTCAAATGAAATATGCATTTCCAAATGCTACTAGGATGACCAAACACATCCTTGTATGTAAGAAGTGTCCTGCAGACATTAAAAAATCCTTCATGGGTATAAGTGAGGAGGACCACGATGAAGAAAGTGCAAGTAGCTCTTTCCAGCGTTCTCGATCCAGAAGTCCTCCTGCTGCTGCTTCTGTAACATCAGCATCATCACAAAGGGTTGCCCAATCAACATCCTCGAGTAACCAAATACTGCAAGCAACTGTATACAAAAAACTCTCAATGGCTTCATTTGTAGACAAGATGACACCTGAAGATCAGGAAAAAATTGACCAAGCTCTTGCAAGAGCAATATATTCTTCTGGAACGCCACTGTCAATAACTGAAAATGCATACTGGCAGGAAGTTTTTAAATTACTAAGACCATCATACCGTTTGCCCAGCAGACATTCTTTGAGCAAGCCTCTTTTAGAGTCAGAATATGAACGGGTAATGGAATCTGTGCAAGGAAGAATCAATGAAGCACTGTGTCTTGCAGTACTTACAGATGGATGGACAAATGTGCGGGGAGAAGGAATCATAAACTTTGTGATAACAACACCTCAACCAGTTTTTTACAGAAGCATTGAAACAGGAGAGAACAGACACACTGCAGAGTATATCAGTTGTAAAATATGTGAAGTCCTACAGAAGACAGGGAGCGGTAAAGTATTTGCTTTGCTGACTGACAATGCAAGTAACATGAAAGCAGCATGGGAGATCATAACGGATAAATANCCACATATTACTGCAATAGGATGTGCATCCCATGGCCTAAACTTGCTTCTTAATGACATCATGAAGTTGGACACTCTCCAAAAGATCTANAGAAGAGCAAAAGAAGTTATAAAACATGTAAAAGCTACTCATATTGTAGCTGCTGTCTTCAAGAAGAAGCAAGAAGAAAAGAATGCAAAGAATAAAATAGTGACACTGAAACTCTGTAGTAAAACTCGATGGGGTGGAGTGGTAATGTCCTTTGAGAGTTTACTAAAAAACAAAGAAGCTCTTCAAGAAACAGTAATAGTTGAGGATCTTAAAGTACCCAGAAGTGTAAGGAACACTGTACTTGATGAGGATGTCTTCTGGGTTCAACTGCAGAACTCCCTGAAGATTCTAAAGCCAATTTCTTCAGCAATCACTGCATCTGAATCAGACAGTGCACTTTTGTCAGACATTCCTTACCAAATGGCCCAGATAAAATCAACTGTTTTTGAGAATCTAAGTGTATTTCCGCTTACAAGTACAGAAGAAAGTAAAGTGAAAGACTTTATTAAGAAACGGGAAGAATTTTGTTGTCAGCCAATTCATGCTGCTGCAAATCTCTTGGATCCAAGATTCAAAGGCAGAAATGTAAGTGATGATAGCACTGCTACTGCATTTGACTGGATTACAAAACAAGCAGCACACTTAGGACTTGATGTTGGAAAGGTACTTTCAAATGTTGCAGAATACAGAACATCTTCAGGTGTTTGGTCCAGGAATGCAGTCTGGGATTCTGCCAAGCATATCCCTCCTGCAACATGGTGGCAAGGCCTTTGCACGACACAGCCTCTGACTCCTCTTGCTTCTCGCCTGCTTCAGATTCCTCCATCTTCTGCAGCATGTGAAAGAAATTGGTCTATGTTTGGAAATACTCGCACCAAATCAAGAAATAAACTAACATGTGAAAGAGTAGAGAAGCTTGTCTCAATCCGGGCAAACCTTCAGTTTTCAGAAGTCCGTGAAGATGATAAAAATGAAGCATCAGAAGAAGCAGAAACTGCTGATAGCGATAGCTCAGAAAATGAGACTGATTAGACAAAGTTCCATGTGGCAAAAGTTGTATTCAATGAGTTTGGGTTTTTTTCCTTTTTTCCCTCAGCTCCTTTTCTGAAAATGAGTGCTTTCTGTATCTGCTTGACACTGTGGAGGACACTAAGTCCAGAAAACATAATAACTTTCTTTGTTTTACTATAATGTTGATGGTTTCTTCTGTTCTCAAGTTTTTGCCTGCTTCTCATAAACTGGCAAAAACTAAGAGATGCTAGATTCCTTAAAGTTCAGCAGCTTGTAGCTCCATTTGTAACAAAAATTAAAAACATTTAAAAGTAAATTCAATTAGTAAATTTGTAATTATTGTCTGAATAAACTATACTTTTAAATTTAATATACCAAACATGATAATTTTATGAGCAAACCAAGTTATACATAATACATTTTTATGTTCCTAAACTAACAAAGTGACTTTAGATCTGTAAAGGGCGCTAAAAAAATAAGTATTGCATATATTTCAATTTTCCCCAAAATTTCCATTTTTTCCCGAAAAACGTTTTCTCCCATGGCTTCAAAATTTCCGGAAATTTTACATCTCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-1_Mam | IRF9 | 2949 | 2963 | - | -2.84 | AAAAAAACCCAAACT |
| hAT-1_Mam | IRF8 | 2896 | 2908 | + | -3.00 | AGAAAATGAGACT |
| hAT-1_Mam | E2F7 | 2749 | 2762 | + | -3.33 | TACTCGCACCAAAT |
| hAT-1_Mam | IRF9 | 2368 | 2382 | + | -3.82 | AAGTAAAGTGAAAGA |
| hAT-1_Mam | IRF8 | 2999 | 3011 | - | -4.06 | AGATACAGAAAGC |
| hAT-1_Mam | Nr2F6 | 657 | 671 | - | -6.53 | AAGGTCACAGGGCCA |
| hAT-1_Mam | EWSR1-FLI1 | 2956 | 2973 | - | -11.09 | GGAAAAAAGGAAAAAAAC |
| hAT-1_Mam | EWSR1-FLI1 | 16 | 33 | + | -12.28 | GGAAAAAATCACGGAATA |
| hAT-1_Mam | AT4G12670 | 596 | 624 | - | -16.39 | CAAAACCTTTAGACTTGCTCTTACTTCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
