Zaphod5b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001192 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 406 |
| Kimura value | 27.74 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod5b subfamily |
| Comment | 8 bp TSD (hard to see). 17 bp TIRs. Present Eutheria, absent in marsupials. |
| Sequence |
CAGAGGCNTAACAACTACAGTACGAGCCCGTGTGCAACTCAGGAAGTGGGCCCCCTCTCCCTCCTCTCCCCCCCTCTNCCTCCGTCTTACGTCAAACATTTGCTTCGCTTAAAGCTCGTAAAATGCCATTTCATTAAATCGTGTTTTCATTTATGTAAGATGACTGTCATGCCAAAGCTATTTTATTGTTATAGAAGTTAGGAAAATATAAAGAAAATACATTTTTAGAATAAAATAACACAAAACATATTTTAGTTCTATCTTCTTGATTTTTAAATGAAATTATGGATCTCCAAGCCTAATTTTTGTTTCATGNCAATTAAAATATTTCCTCCTGGGGCCCTCTCTGGGCCCCCTTGCCCCTGGACCANNTNTCAGCTGCACACTCTNCAGCTTTGATGGTTAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod5b | BPC1 | 53 | 76 | - | 2.24 | GAGGGGGGGAGAGGAGGGAGAGGG |
| Zaphod5b | Sox1 | 176 | 190 | + | 1.91 | AGCTATTTTATTGTT |
| Zaphod5b | TCP14 | 46 | 63 | - | 0.53 | GAGGGAGAGGGGGCCCAC |
| Zaphod5b | BPC1 | 50 | 73 | - | -0.20 | GGGGGGAGAGGAGGGAGAGGGGGC |
| Zaphod5b | Sox21b | 176 | 190 | + | -7.87 | AGCTATTTTATTGTT |
| Zaphod5b | EWSR1-FLI1 | 55 | 72 | - | -10.25 | GGGGGAGAGGAGGGAGAG |
| Zaphod5b | EWSR1-FLI1 | 59 | 76 | - | -16.07 | GAGGGGGGGAGAGGAGGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
