Zaphod5b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001192 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 406 |
| Kimura value | 27.74 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod5b subfamily |
| Comment | 8 bp TSD (hard to see). 17 bp TIRs. Present Eutheria, absent in marsupials. |
| Sequence |
CAGAGGCNTAACAACTACAGTACGAGCCCGTGTGCAACTCAGGAAGTGGGCCCCCTCTCCCTCCTCTCCCCCCCTCTNCCTCCGTCTTACGTCAAACATTTGCTTCGCTTAAAGCTCGTAAAATGCCATTTCATTAAATCGTGTTTTCATTTATGTAAGATGACTGTCATGCCAAAGCTATTTTATTGTTATAGAAGTTAGGAAAATATAAAGAAAATACATTTTTAGAATAAAATAACACAAAACATATTTTAGTTCTATCTTCTTGATTTTTAAATGAAATTATGGATCTCCAAGCCTAATTTTTGTTTCATGNCAATTAAAATATTTCCTCCTGGGGCCCTCTCTGGGCCCCCTTGCCCCTGGACCANNTNTCAGCTGCACACTCTNCAGCTTTGATGGTTAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod5b | PRDM9 | 54 | 73 | - | 18.82 | GGGGGGAGAGGAGGGAGAGG |
| Zaphod5b | TCP1 | 46 | 56 | + | 17.30 | GTGGGCCCCCT |
| Zaphod5b | ZNF530 | 51 | 64 | - | 16.85 | GGAGGGAGAGGGGG |
| Zaphod5b | ELF1 | 40 | 48 | + | 16.58 | CAGGAAGTG |
| Zaphod5b | TCP23 | 46 | 53 | - | 16.36 | GGGCCCAC |
| Zaphod5b | HOXC13 | 115 | 123 | + | 16.35 | CTCGTAAAA |
| Zaphod5b | PRDM9 | 57 | 76 | - | 16.20 | GAGGGGGGGAGAGGAGGGAG |
| Zaphod5b | Ikzf3 | 40 | 48 | + | 16.18 | CAGGAAGTG |
| Zaphod5b | cassava45561.m1 | 46 | 54 | - | 16.09 | GGGGCCCAC |
| Zaphod5b | ZNF768 | 341 | 349 | + | 16.08 | CCCTCTCTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
