Zaphod5b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001192 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 406 |
| Kimura value | 27.74 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod5b subfamily |
| Comment | 8 bp TSD (hard to see). 17 bp TIRs. Present Eutheria, absent in marsupials. |
| Sequence |
CAGAGGCNTAACAACTACAGTACGAGCCCGTGTGCAACTCAGGAAGTGGGCCCCCTCTCCCTCCTCTCCCCCCCTCTNCCTCCGTCTTACGTCAAACATTTGCTTCGCTTAAAGCTCGTAAAATGCCATTTCATTAAATCGTGTTTTCATTTATGTAAGATGACTGTCATGCCAAAGCTATTTTATTGTTATAGAAGTTAGGAAAATATAAAGAAAATACATTTTTAGAATAAAATAACACAAAACATATTTTAGTTCTATCTTCTTGATTTTTAAATGAAATTATGGATCTCCAAGCCTAATTTTTGTTTCATGNCAATTAAAATATTTCCTCCTGGGGCCCTCTCTGGGCCCCCTTGCCCCTGGACCANNTNTCAGCTGCACACTCTNCAGCTTTGATGGTTAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod5b | ARALYDRAFT_484486 | 46 | 53 | - | 15.43 | GGGCCCAC |
| Zaphod5b | TB1 | 349 | 357 | + | 15.36 | GGGCCCCCT |
| Zaphod5b | TB1 | 48 | 56 | + | 15.36 | GGGCCCCCT |
| Zaphod5b | lsy-2 | 15 | 22 | + | 15.13 | CTACAGTA |
| Zaphod5b | VIT_15s0048g01150 | 46 | 53 | - | 15.13 | GGGCCCAC |
| Zaphod5b | ZNF692 | 46 | 53 | - | 15.00 | GGGCCCAC |
| Zaphod5b | TCP21 | 46 | 56 | + | 14.98 | GTGGGCCCCCT |
| Zaphod5b | HOXC11 | 113 | 123 | + | 14.88 | AGCTCGTAAAA |
| Zaphod5b | ARALYDRAFT_897773 | 46 | 54 | - | 14.87 | GGGGCCCAC |
| Zaphod5b | HOXD12 | 114 | 123 | + | 14.84 | GCTCGTAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
