Zaphod5b
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001192 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 406 |
| Kimura value | 27.74 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod5b subfamily |
| Comment | 8 bp TSD (hard to see). 17 bp TIRs. Present Eutheria, absent in marsupials. |
| Sequence |
CAGAGGCNTAACAACTACAGTACGAGCCCGTGTGCAACTCAGGAAGTGGGCCCCCTCTCCCTCCTCTCCCCCCCTCTNCCTCCGTCTTACGTCAAACATTTGCTTCGCTTAAAGCTCGTAAAATGCCATTTCATTAAATCGTGTTTTCATTTATGTAAGATGACTGTCATGCCAAAGCTATTTTATTGTTATAGAAGTTAGGAAAATATAAAGAAAATACATTTTTAGAATAAAATAACACAAAACATATTTTAGTTCTATCTTCTTGATTTTTAAATGAAATTATGGATCTCCAAGCCTAATTTTTGTTTCATGNCAATTAAAATATTTCCTCCTGGGGCCCTCTCTGGGCCCCCTTGCCCCTGGACCANNTNTCAGCTGCACACTCTNCAGCTTTGATGGTTAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod5b | LjSGA_053525.1 | 46 | 53 | - | 16.05 | GGGCCCAC |
| Zaphod5b | PK19717.1 | 46 | 54 | - | 15.77 | GGGGCCCAC |
| Zaphod5b | ELF3 | 40 | 48 | - | 15.76 | CACTTCCTG |
| Zaphod5b | EHF | 40 | 48 | - | 15.76 | CACTTCCTG |
| Zaphod5b | OsI_08196 | 46 | 53 | - | 15.69 | GGGCCCAC |
| Zaphod5b | PLAGL2 | 349 | 356 | + | 15.67 | GGGCCCCC |
| Zaphod5b | PLAGL2 | 48 | 55 | + | 15.67 | GGGCCCCC |
| Zaphod5b | Klf15 | 52 | 73 | + | 15.64 | CCCCTCTCCCTCCTCTCCCCCC |
| Zaphod5b | ARALYDRAFT_493022 | 46 | 53 | - | 15.63 | GGGCCCAC |
| Zaphod5b | ARALYDRAFT_495258 | 46 | 53 | - | 15.43 | GGGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
