Zaphod5a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001254 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 504 |
| Kimura value | 27.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod5a subfamily |
| Comment | 8 bp TSD (hard to see). TIRs distantly shared with family members DNA8-60_AP in the pea aphid and hAT-N1001d3_Croc in ancient crocodilians. Pos 127-222 is the remainder of the coding region, matching the C-terminus of Zaphod and Arthur transposases. Present in placentals, absent from marsupials. |
| Sequence |
CAGGGGCATAACAACCACAGTGTGGGCCCGCGTGCAACTCAAGAAGTGGGCCCCCTCTCCCTCCGCCTCATGTCTCTTCAAAAACAAATCTCAGTGCACAGTGCAGTGAAACACGAAACGAAACAGAGCTCGCTTACTATTGAAAGCAAAAGAGCACGGCAACTTAATTTAAACAAGATAATTCAAACATTTGCTTCGCTTAAAGCTCGTAAAATGCCATTTCATTAAATCGTGTTTTCATTTATGTAAGATGACTGTCATGCCAAAGCTATTTTATTGTTATAGAAGTTAGGAAAATATAAAGAAAATACATTTTTAGAATAAAATAACACAAAACATATTTTAGTTCTATCTTCTTGATTTTTAAATGAAATTATGGATCTCCAAGCCTAATTTTTGTTTCATGTCAATTAAAACATTTCCTCCTGGGGCCCTCTATGGGCCCNCTTGCCCCTGGACCGTCTGNCAGCTGCACACTCTGCGCCCCTGGTAGTTACGCTCTTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod5a | TCP1 | 46 | 56 | + | 17.30 | GTGGGCCCCCT |
| Zaphod5a | ZNF530 | 51 | 64 | - | 16.85 | GGAGGGAGAGGGGG |
| Zaphod5a | TCP23 | 22 | 29 | - | 16.36 | GGGCCCAC |
| Zaphod5a | TCP23 | 46 | 53 | - | 16.36 | GGGCCCAC |
| Zaphod5a | HOXC13 | 206 | 214 | + | 16.35 | CTCGTAAAA |
| Zaphod5a | cassava45561.m1 | 46 | 54 | - | 16.09 | GGGGCCCAC |
| Zaphod5a | LjSGA_053525.1 | 22 | 29 | - | 16.05 | GGGCCCAC |
| Zaphod5a | LjSGA_053525.1 | 46 | 53 | - | 16.05 | GGGCCCAC |
| Zaphod5a | PK19717.1 | 46 | 54 | - | 15.77 | GGGGCCCAC |
| Zaphod5a | OsI_08196 | 22 | 29 | - | 15.69 | GGGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
