Zaphod4a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001290 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1823 |
| Kimura value | 29.46 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod4a subfamily |
| Comment | 8 bp TSDs. Only 7 bp TIRs. Non-autonomous. Remaining ORF 1022-1567 encodes the C-terminal quarter of a transposase closest to Arthur1_Cin_tp and Arthur3_Api_tp, but closer to original Zaphod than to original Arthur. Sloppy hairpin structure at 637-736. Pos 303-338 is inverse duplicated at pos 576-541. Present at orthologous sites in elephant and humans, absent in opossum. |
| Sequence |
CAGTGGCGAAACTAAGCCGATGCAGCCGATGCGTTGCATCGGGGCCCATGGGCTATAAGGGGCCCATGTGAGTTGAAAGTTTCAATAGTATTGATCGTGGCCACTGAATAGGCTAATGCATTTAAAAATCAGTATGACATCATTAGCAAACAAACGAAATTGTACTTGAATAGAATTCAACTTTGGCTGGATTTTCTTAAAAATCTGGCTACAGTATTATGGCGCTGGCGCACATATTTTAATTTGGCGCTGGGCCTCCATGACAATAGAGTAGGTGAAATTCCATAAATGTTCGAGCGCATCTATACTCTATTCCAATGACCTACGGAGTAATAAATCATTCTGTCAGTTGCGCAGTAACATTTAAGTCCCACCCTCCTAATCCCTAATTGGCTAAGCAGTTGCAAGACCAAATTACATAGTACTGAAGAAAATATAAACACGAGCATGTAAACAATATCACAATAGATCACTGTACTTGTCAAATTTACCCTGCGTAATTCAGACTTTCTCTATTTCGCCAAAGAACGCCTCTCGCGCATTTATTACTCCGCAGGTCATTGGAATAGAGTATAGCACGCCTGGATTATTATAATGTGCAAAGAGATCGTACATATATCTCGCCGGTACGTCGGGAGCCCCTATGAAAGCTCTTTGATCTTTGCCGGCTTTTTAGCCGAAAGGATTCGGAAGCCTTTGTCGGCATCGGCAAAGACAAAGAGCTGTCGCAGCGGTTGATAGCCCTTTGATATTTGGCCGCTTTTTAGCCGAAAGGATGCGGAAGTCTTTGTCGGAATCATGTATTAATATATAGTGGACAATGCCATTGTCTTAAAGGCTAGGTGAAAATTGATTTTTTAATCATGTTTCCCGCATCGAAAAACTCCCTTGGCCGAAATTTCGCCGAGATCCGACGATATTTAAAANATTTTTGCATCGTCTGCTTCGGCCTGTCGATATGCCGAGAGCCAATATGATAGCTCTCTGATCTTCGGCAGTTTTTTAGGCGAAGGGATTATAGTTCATCATTTTTCATCGTGTAATTGATATAGTAACTACCCAGCTAGACACGAGATTTCAAGGGCTAAGTACAGTTGCTGACTTGTTTGCATTTCTTACTCCAACCCAATTAATTCAAATGGATGAAAAGTCCATTGTGAAAAATGCACAGAAGGTGCAAAAGAAATTTTCAAGTGACCTATCAGAATCATTACCAATGCAATTACTGCTTTGCGTAAAATCATTAAAAAGTGAAATTGAAAAAATTAAAACTATCTGCGAATTTGCCGAGATAGTTATTATAAAATACTACGACATGAGTGCAAGTTTTTCTGAAGTGTGTTCTTTATTAATTTTATTTTTGACAATTCCCGTCACTGTATCTATAGCAGAACGTTCTTTCTCCAAATTAAAACTAATTAAAAACTATTTAAGGAACACTATGGGACAACAACGTTTAACAGAGTTAGCACTACTCAGCATAGAAGCTCAAGCAGCTGAAAAAATGGAAGTTGCAAAACTTATCGATGATTTTGCTAATGCCAAATCACGACGAAGACCATTCTAAGTTTGCTTAAAATTTTTAAATTTGTTTATATTGACAGAATATTGTCTTTGTTTATTATATTGTCATGTTTTGCTTTAGATTTTAAGTTTCAAAGTTTGTTTATATAGTAATTTTTTTGTTTTATCAAAAAGAATGCTATTTGGTTATTAATAAAGTTATGTACCTATGTATGGCAAAATAAGCTCTTTTTGTTGTACGTAGGGGAGGCCCACATTAGACTTTGCATCGGGGCCCATTTTTACTAGTTATGCCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod4a | TRP1 | 1642 | 1662 | - | -0.86 | ACTTTGAAACTTAAAATCTAA |
| Zaphod4a | BPC6 | 499 | 519 | + | -1.46 | AATTCAGACTTTCTCTATTTC |
| Zaphod4a | Rarg | 70 | 84 | + | -2.83 | GAGTTGAAAGTTTCA |
| Zaphod4a | IRF9 | 1633 | 1647 | - | -3.05 | ATCTAAAGCAAAACA |
| Zaphod4a | Sox21b | 1213 | 1227 | - | -7.11 | AGTAATTGCATTGGT |
| Zaphod4a | Sox21b | 469 | 483 | - | -8.90 | GACAAGTACAGTGAT |
| Zaphod4a | AT4G12670 | 1638 | 1666 | - | -12.94 | ACAAACTTTGAAACTTAAAATCTAAAGCA |
| Zaphod4a | AT4G12670 | 1245 | 1273 | + | -15.36 | TAAAAAGTGAAATTGAAAAAATTAAAACT |
| Zaphod4a | BCL6B | 1396 | 1412 | + | -17.39 | TTCTTTCTCCAAATTAA |
| Zaphod4a | BPC5 | 493 | 522 | - | -46.09 | GGCGAAATAGAGAAAGTCTGAATTACGCAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
