Zaphod4a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001290 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1823 |
| Kimura value | 29.46 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod4a subfamily |
| Comment | 8 bp TSDs. Only 7 bp TIRs. Non-autonomous. Remaining ORF 1022-1567 encodes the C-terminal quarter of a transposase closest to Arthur1_Cin_tp and Arthur3_Api_tp, but closer to original Zaphod than to original Arthur. Sloppy hairpin structure at 637-736. Pos 303-338 is inverse duplicated at pos 576-541. Present at orthologous sites in elephant and humans, absent in opossum. |
| Sequence |
CAGTGGCGAAACTAAGCCGATGCAGCCGATGCGTTGCATCGGGGCCCATGGGCTATAAGGGGCCCATGTGAGTTGAAAGTTTCAATAGTATTGATCGTGGCCACTGAATAGGCTAATGCATTTAAAAATCAGTATGACATCATTAGCAAACAAACGAAATTGTACTTGAATAGAATTCAACTTTGGCTGGATTTTCTTAAAAATCTGGCTACAGTATTATGGCGCTGGCGCACATATTTTAATTTGGCGCTGGGCCTCCATGACAATAGAGTAGGTGAAATTCCATAAATGTTCGAGCGCATCTATACTCTATTCCAATGACCTACGGAGTAATAAATCATTCTGTCAGTTGCGCAGTAACATTTAAGTCCCACCCTCCTAATCCCTAATTGGCTAAGCAGTTGCAAGACCAAATTACATAGTACTGAAGAAAATATAAACACGAGCATGTAAACAATATCACAATAGATCACTGTACTTGTCAAATTTACCCTGCGTAATTCAGACTTTCTCTATTTCGCCAAAGAACGCCTCTCGCGCATTTATTACTCCGCAGGTCATTGGAATAGAGTATAGCACGCCTGGATTATTATAATGTGCAAAGAGATCGTACATATATCTCGCCGGTACGTCGGGAGCCCCTATGAAAGCTCTTTGATCTTTGCCGGCTTTTTAGCCGAAAGGATTCGGAAGCCTTTGTCGGCATCGGCAAAGACAAAGAGCTGTCGCAGCGGTTGATAGCCCTTTGATATTTGGCCGCTTTTTAGCCGAAAGGATGCGGAAGTCTTTGTCGGAATCATGTATTAATATATAGTGGACAATGCCATTGTCTTAAAGGCTAGGTGAAAATTGATTTTTTAATCATGTTTCCCGCATCGAAAAACTCCCTTGGCCGAAATTTCGCCGAGATCCGACGATATTTAAAANATTTTTGCATCGTCTGCTTCGGCCTGTCGATATGCCGAGAGCCAATATGATAGCTCTCTGATCTTCGGCAGTTTTTTAGGCGAAGGGATTATAGTTCATCATTTTTCATCGTGTAATTGATATAGTAACTACCCAGCTAGACACGAGATTTCAAGGGCTAAGTACAGTTGCTGACTTGTTTGCATTTCTTACTCCAACCCAATTAATTCAAATGGATGAAAAGTCCATTGTGAAAAATGCACAGAAGGTGCAAAAGAAATTTTCAAGTGACCTATCAGAATCATTACCAATGCAATTACTGCTTTGCGTAAAATCATTAAAAAGTGAAATTGAAAAAATTAAAACTATCTGCGAATTTGCCGAGATAGTTATTATAAAATACTACGACATGAGTGCAAGTTTTTCTGAAGTGTGTTCTTTATTAATTTTATTTTTGACAATTCCCGTCACTGTATCTATAGCAGAACGTTCTTTCTCCAAATTAAAACTAATTAAAAACTATTTAAGGAACACTATGGGACAACAACGTTTAACAGAGTTAGCACTACTCAGCATAGAAGCTCAAGCAGCTGAAAAAATGGAAGTTGCAAAACTTATCGATGATTTTGCTAATGCCAAATCACGACGAAGACCATTCTAAGTTTGCTTAAAATTTTTAAATTTGTTTATATTGACAGAATATTGTCTTTGTTTATTATATTGTCATGTTTTGCTTTAGATTTTAAGTTTCAAAGTTTGTTTATATAGTAATTTTTTTGTTTTATCAAAAAGAATGCTATTTGGTTATTAATAAAGTTATGTACCTATGTATGGCAAAATAAGCTCTTTTTGTTGTACGTAGGGGAGGCCCACATTAGACTTTGCATCGGGGCCCATTTTTACTAGTTATGCCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod4a | TCF7L1 | 652 | 663 | - | 18.72 | AAAGATCAAAGA |
| Zaphod4a | Sox1 | 817 | 831 | - | 18.66 | GACAATGGCATTGTC |
| Zaphod4a | Sox1 | 817 | 831 | + | 18.62 | GACAATGCCATTGTC |
| Zaphod4a | DOF5.8 | 1246 | 1264 | - | 18.24 | TTTTTCAATTTCACTTTTT |
| Zaphod4a | DOF5.1 | 1246 | 1264 | + | 18.24 | AAAAAGTGAAATTGAAAAA |
| Zaphod4a | Sox21a | 817 | 831 | + | 17.66 | GACAATGCCATTGTC |
| Zaphod4a | ZmbZIP57 | 134 | 143 | - | 17.44 | ATGATGTCAT |
| Zaphod4a | TCX6 | 1574 | 1588 | - | 17.40 | ATTTAAAAATTTTAA |
| Zaphod4a | TCX6 | 1581 | 1595 | + | 17.34 | TTTTAAATTTGTTTA |
| Zaphod4a | SoxN | 819 | 829 | - | 17.20 | CAATGGCATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
