Zaphod3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001125 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 2624 |
| Kimura value | 22.08 |
| Tau index | 1.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod3 subfamily |
| Comment | Zaphod3 encodes an ORF (~821..2293) that is roughly equally similar to that of Zaphod and Arthur. MER97a-d are non-autonomous, internal deletions of Zaphod3. |
| Sequence |
CAGTGGCGTACCAAGGGCGGGGCGGTGGGAGCGGTCCGCCCCGGGTGCAGGCAATAAGGGGGTGCATTGTCTGTAGAGAATTTAAAAACAATAATAAAACCGACTAAAAGTCGGTCTGCTTTTTATTATCACCATGCGCCGGCAATTCTAAACAATGTCAGTGATAAAATACTCCTCCCCGAAAAATCTTTTGTTGGTCTAAGTTCTAAACAATTGCTGCGGTTACTGTTGAGTTTTAATAATATATATGTAAGCTTCAAATTAGCACATTTTTATTACTTATCCTTTAATAAACATTGTATTCTACATGGAAGTTAATTCGGAGAACTCCCAGTTATACAGTCGGCCCCCGACACACGCGGACTCAGCTACACGCGTTCGTTTCGAGAGTAAGTTCGTAACGGTTCGGAATCGTTCGAGCTCGCTTCGGGCGCAGTTCGTGTCTCCAACCCCTGTGGTACTACATATTCCTGCGTTTAAACAGTAGATTCGAAATAAACAATGATAGCACAGTGATTGTAAAGACGAAGAAACAGAACTTGAGTTACTTCAATTCTGTCATTCTATGTGACCACTTGGAGTTTTTATTTGTGTTTAAAATTTAAAACAGTGAAACAGAGTGCGAACTGCGAGGTGTAATATTTTTGTTTGGTAAGTGCAAATTTTAGTTCATACATGAAATATTTTACTGAATTTGAATAATATCTTTAAAATTGAAATTTATTCTTTTTAAATTGTTAATTGTTTTAAAACTAAAGAATGAATCAAGAAAATAAAACATTACATCAGTGGTACGATTTAGTAGTGGCAGATACTGAAAGCANAATGCCTNGGAATTCTTTCTGNTAGCACTCTNGATGCTTCGAACACTGATCAAATGTGCGAAGTGGTCAGATATGNCNATATTGAAGATGGTAAAGTTGAAATAAAGGAATCATTCTTGGGCTTCTTTCCTATTTCCGGGAAGACTGNTGCTGAACTTNCAGAAGAGANNTCGAAACAACTGGACGGTGATGGGCGGGACATAANCNTCTNCTGTGGNCAAGGATATAACGATGCTGCANNTGCGGCCGGTATTCACGGTGGNGTTCANGCAAAAATCGAAGANATTAATCCCAAATCNTTATTTNTATCTTGTGCAAATCATTCTCTGAACCTTTGCGGAGTTCACTCTTTTGGAAGTATTTCTTCATGCGTGACGTTTTTTNGAACTTTGGAAAAAAATTATTCATTCTTTTCAGTCTCACCTCATCGATGGAAAACGCTGCAGAATGTAGGTATAACAGTGAAAAGACTTTCCCAGACAAGATGGAATGCTCANTATGAAGCTGTGCGCGCAGTANAGACAAATTTTGAAAAGTTAATCTCAACCTTTGAAGTACTGTGTAATCCAAAAGAAAATGTGGACNCAAGAGGATCNGCTCAGATTTTNCTCTCTGCTGTATGCGATTTTTCTTTTCTGAGTTATCTTTTTTTCTGGTGTGAAGTTTTAGATGAGGTTAATCAGACACAAAAATATTTGCAAACAGCCAGAATCAGCCTTGAACAATGTACAGTGAAACACCAAGCTTTAAAATTGTTCCTTGAAGATCGGCGCACAGAAATTGTGGAGAAGGCCATTAACTATGCAACAACAAAATGTAAGGAAATGGACATTTACATAGAAAAAAGAATCAAATTTCGAAGAAGAATGCCAGGAGAAACGACAAAAGATGCTGGTCTTACATTGCCAGAAGAAATCAAAAGGGCAATGTTTGAACGCCTCGATCGTTTTCACCAAGAACTGGACACTCGTTCTAAAGCAATGGATCAAATAATGTCAATGTTCGCTATCATTCAGCCATTTTCTCTGATTTTTGCAGAAGAAGAAAAACTTCGGAAGTTTTTACCAAATATAATAGAAATTTATGATGAATTTTCTGGTGAAGATATTTTAGTGGAAATTTTTCGACTGCGGAGACATTTGAAAGCCGCTAGAATCGATCCCGAAGAAACAAAGACATGGACAGTATTGCAATTTCTGGAATTTATTGTGAAATGGGATTTTTATGAATCTCTGCCAAACTTATCCTTATGTTTAAGACTTTTCCTAACTATTTGTATATCTGTTGCTTCATGTGAAAGAAACTTTTCGAAATTAAAATTAATAAAAAGTGTTCTTCGATCAACTATGAGCGAAGATAGATTGACAAATCTGGCTATACTGTCTATTGAACATGAATATGCGAAGAAGATCAATTTTGACGAAGTCATTGACAAATTTGCAGAAGTTAAGGCTCGAAAACAGAAACTGTAATGTTATTATTCATTACTGCGACAGACCAATATGTAGGTATAAGTTTTTTCCTTTTTTCAAAAAATACATTAATGTAATTAAAAAGTATTAATCCATTACTTTTTTTCCTTTTTTGTACTGTAATATTTATTTTTTATTTTTTATACTGGCATGATTATATATACAAAGTTCAATAAAAGAAAATTTTCACTGTCTGCGTTTCTTTTCTGGCCATTATTATTATTCGTTTCATTTCATGATTATTACTGAAAATAATTTTGTCGTATAGAGGAGGGGGGTGTTAAAAAATGATCCGCTCCGGGTGTCAAATACGCTAGGTACGCCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod3 | TCX2 | 593 | 607 | - | 16.61 | TTTTAAATTTTAAAC |
| Zaphod3 | JKD | 1700 | 1711 | - | 16.59 | TTTTGTCGTTTC |
| Zaphod3 | RVE4 | 1927 | 1935 | + | 16.53 | AGATATTTT |
| Zaphod3 | NUC | 2552 | 2563 | + | 16.45 | TTTTGTCGTATA |
| Zaphod3 | DOF5.8 | 2334 | 2352 | + | 16.41 | TATAAGTTTTTTCCTTTTT |
| Zaphod3 | MGP | 2551 | 2563 | - | 16.38 | TATACGACAAAAT |
| Zaphod3 | RVE7 | 1927 | 1935 | - | 16.38 | AAAATATCT |
| Zaphod3 | AP3 | 2400 | 2412 | - | 16.37 | ACAAAAAAGGAAA |
| Zaphod3 | SVP | 2400 | 2415 | - | 16.35 | AGTACAAAAAAGGAAA |
| Zaphod3 | KLF5 | 14 | 23 | - | 16.29 | GCCCCGCCCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
