Zaphod3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001125 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 2624 |
| Kimura value | 22.08 |
| Tau index | 1.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod3 subfamily |
| Comment | Zaphod3 encodes an ORF (~821..2293) that is roughly equally similar to that of Zaphod and Arthur. MER97a-d are non-autonomous, internal deletions of Zaphod3. |
| Sequence |
CAGTGGCGTACCAAGGGCGGGGCGGTGGGAGCGGTCCGCCCCGGGTGCAGGCAATAAGGGGGTGCATTGTCTGTAGAGAATTTAAAAACAATAATAAAACCGACTAAAAGTCGGTCTGCTTTTTATTATCACCATGCGCCGGCAATTCTAAACAATGTCAGTGATAAAATACTCCTCCCCGAAAAATCTTTTGTTGGTCTAAGTTCTAAACAATTGCTGCGGTTACTGTTGAGTTTTAATAATATATATGTAAGCTTCAAATTAGCACATTTTTATTACTTATCCTTTAATAAACATTGTATTCTACATGGAAGTTAATTCGGAGAACTCCCAGTTATACAGTCGGCCCCCGACACACGCGGACTCAGCTACACGCGTTCGTTTCGAGAGTAAGTTCGTAACGGTTCGGAATCGTTCGAGCTCGCTTCGGGCGCAGTTCGTGTCTCCAACCCCTGTGGTACTACATATTCCTGCGTTTAAACAGTAGATTCGAAATAAACAATGATAGCACAGTGATTGTAAAGACGAAGAAACAGAACTTGAGTTACTTCAATTCTGTCATTCTATGTGACCACTTGGAGTTTTTATTTGTGTTTAAAATTTAAAACAGTGAAACAGAGTGCGAACTGCGAGGTGTAATATTTTTGTTTGGTAAGTGCAAATTTTAGTTCATACATGAAATATTTTACTGAATTTGAATAATATCTTTAAAATTGAAATTTATTCTTTTTAAATTGTTAATTGTTTTAAAACTAAAGAATGAATCAAGAAAATAAAACATTACATCAGTGGTACGATTTAGTAGTGGCAGATACTGAAAGCANAATGCCTNGGAATTCTTTCTGNTAGCACTCTNGATGCTTCGAACACTGATCAAATGTGCGAAGTGGTCAGATATGNCNATATTGAAGATGGTAAAGTTGAAATAAAGGAATCATTCTTGGGCTTCTTTCCTATTTCCGGGAAGACTGNTGCTGAACTTNCAGAAGAGANNTCGAAACAACTGGACGGTGATGGGCGGGACATAANCNTCTNCTGTGGNCAAGGATATAACGATGCTGCANNTGCGGCCGGTATTCACGGTGGNGTTCANGCAAAAATCGAAGANATTAATCCCAAATCNTTATTTNTATCTTGTGCAAATCATTCTCTGAACCTTTGCGGAGTTCACTCTTTTGGAAGTATTTCTTCATGCGTGACGTTTTTTNGAACTTTGGAAAAAAATTATTCATTCTTTTCAGTCTCACCTCATCGATGGAAAACGCTGCAGAATGTAGGTATAACAGTGAAAAGACTTTCCCAGACAAGATGGAATGCTCANTATGAAGCTGTGCGCGCAGTANAGACAAATTTTGAAAAGTTAATCTCAACCTTTGAAGTACTGTGTAATCCAAAAGAAAATGTGGACNCAAGAGGATCNGCTCAGATTTTNCTCTCTGCTGTATGCGATTTTTCTTTTCTGAGTTATCTTTTTTTCTGGTGTGAAGTTTTAGATGAGGTTAATCAGACACAAAAATATTTGCAAACAGCCAGAATCAGCCTTGAACAATGTACAGTGAAACACCAAGCTTTAAAATTGTTCCTTGAAGATCGGCGCACAGAAATTGTGGAGAAGGCCATTAACTATGCAACAACAAAATGTAAGGAAATGGACATTTACATAGAAAAAAGAATCAAATTTCGAAGAAGAATGCCAGGAGAAACGACAAAAGATGCTGGTCTTACATTGCCAGAAGAAATCAAAAGGGCAATGTTTGAACGCCTCGATCGTTTTCACCAAGAACTGGACACTCGTTCTAAAGCAATGGATCAAATAATGTCAATGTTCGCTATCATTCAGCCATTTTCTCTGATTTTTGCAGAAGAAGAAAAACTTCGGAAGTTTTTACCAAATATAATAGAAATTTATGATGAATTTTCTGGTGAAGATATTTTAGTGGAAATTTTTCGACTGCGGAGACATTTGAAAGCCGCTAGAATCGATCCCGAAGAAACAAAGACATGGACAGTATTGCAATTTCTGGAATTTATTGTGAAATGGGATTTTTATGAATCTCTGCCAAACTTATCCTTATGTTTAAGACTTTTCCTAACTATTTGTATATCTGTTGCTTCATGTGAAAGAAACTTTTCGAAATTAAAATTAATAAAAAGTGTTCTTCGATCAACTATGAGCGAAGATAGATTGACAAATCTGGCTATACTGTCTATTGAACATGAATATGCGAAGAAGATCAATTTTGACGAAGTCATTGACAAATTTGCAGAAGTTAAGGCTCGAAAACAGAAACTGTAATGTTATTATTCATTACTGCGACAGACCAATATGTAGGTATAAGTTTTTTCCTTTTTTCAAAAAATACATTAATGTAATTAAAAAGTATTAATCCATTACTTTTTTTCCTTTTTTGTACTGTAATATTTATTTTTTATTTTTTATACTGGCATGATTATATATACAAAGTTCAATAAAAGAAAATTTTCACTGTCTGCGTTTCTTTTCTGGCCATTATTATTATTCGTTTCATTTCATGATTATTACTGAAAATAATTTTGTCGTATAGAGGAGGGGGGTGTTAAAAAATGATCCGCTCCGGGTGTCAAATACGCTAGGTACGCCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod3 | TSO1 | 592 | 606 | + | 19.24 | TGTTTAAAATTTAAA |
| Zaphod3 | PI | 2399 | 2412 | - | 19.06 | ACAAAAAAGGAAAA |
| Zaphod3 | DOF3.6 | 2391 | 2411 | + | 19.05 | ATTACTTTTTTTCCTTTTTTG |
| Zaphod3 | TCX2 | 593 | 607 | + | 18.48 | GTTTAAAATTTAAAA |
| Zaphod3 | SOL1 | 593 | 607 | + | 18.33 | GTTTAAAATTTAAAA |
| Zaphod3 | SOC1 | 2400 | 2412 | + | 18.19 | TTTCCTTTTTTGT |
| Zaphod3 | AP1 | 2400 | 2412 | - | 17.98 | ACAAAAAAGGAAA |
| Zaphod3 | IDD1 | 1700 | 1711 | - | 17.92 | TTTTGTCGTTTC |
| Zaphod3 | DOF5.8 | 2391 | 2409 | + | 17.85 | ATTACTTTTTTTCCTTTTT |
| Zaphod3 | NAC011 | 2108 | 2128 | - | 17.66 | GTTTCTTTCACATGAAGCAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
