Zaphod2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001124 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 3592 |
| Kimura value | 22.69 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod2 subfamily |
| Comment | MER91A-C are short, non-autonomous derivatives of Zaphod2. |
| Sequence |
CAGGGCCGCCGCGTACGGTTGTNCAGGTTGTGCACTGCACAAGGGCGCCACATCTAAGGGGGCGCCATTCACATCGTAGACATCTTTATTATTTTGAAACATTTTTATATTTTTATTATAACTTTGTTGACTCCAAAGATGGGCGATTTGTATATTTATTATGACAATTTTCCGGCAGATGGCAGTAAAGTGTCTTGTTCTAACAAAATCAGTATATTACGACAATTTTCCGACAGATGGAAGTAAAGTGTCTTGTTCTAACGAAGTNAATATATCTCATTCCGCTTCAACTTACGAAGGAGGAACGAATTCGATAATNGNGAGACCTTGTTGGTNTAAGAATATGTAACATAACCTGTGCTTCTNAACAAGGAATTGCTTTTCCGACTTCTGCACTNNTCAGTAGGTATCTTNAAATNNNAANAAANAATCTCCTATTGGTATTGGTGCACTGGCTAAGTTTGACGTTTCGTATTGCAGTTCNTATNATCTGCCATTTGTTTACGGTACCAGAAAGGTATTGCTGAGTTCCCGGTTTAAANCTACAGNTACTTTCNTTATGACACGAATCACTATGTAATAACTAATATTCATTTACCATTAATAATCCACAAAGTAAGTATTACATAGACATAAATTAGAGATTACTATGTAATGATCCGCTAATTATATTATAGCAATTGTTTATTTGTTGTTATGGAAATTTCGTCAGTACAAAAATTAACTGCTGTTAAAATTTAGCGGCTTNTTACATACATATTATTTTAAAATGTTACAAATTCTAAGATAAAATACTAAGCTATTATATTATTTCTCCCCAGATGTCGGAAAAAAATTTTAAAAAATTATCAGNATCAGAAAACAGAAAATGGAAAGCCATTAGAGAAGAAAATGAAAAAAAATTATTTGGATCATTGAATAAATTTTTGGAGAAAATAGATGAAATGCCAGAAAAAAAGGAAAAGACTTCAGAGCTACTAGTTTCAGCAGAATGTAGCACAGATACGTCACTGATGGAGCAGGATGTGAATTTACCTTCTACTTCCATGTCAACCATAACTGATGAATTTCAAGAAAAACTGGAAGAGAAAAAATCAGAAGAATCCATTAAACCGAATGTACTTTCTGCCGATCCAGGTACGTGGCCATGTAATTTGAATATTAAACAACGGNACACTCTTGTTGAAAATTATCCACCTCAAGTAAGAAATTTTAACTTTCCAAAAGACAGTACAGGTAGGAAGTTTTCGGAAACTTATTANACACGAATTCTTCCAAATGGTGAAAAAATCACTAGATCCTGGTTACTTTATTCTACCTCAAAGGATTCTGTATTTTGTCTATATTGCAAACTCTTTGGGGATAGAAAAAATCAACTGAAGAATGAGAATGGATGCAAAGATTGGCAGCATTTATCACATATTCTTAGTAAACATGAAGAAAGTGAAATGCACATCAACAATAGTGTTAAGTATTCAAAATTGAAATCTGATTTGAAAAAATATATAACTATCGATGCTGCAGAACAGAGACTATATGAAAATGAGGAAAAATATTGGCGTGCTGTTGTTGAACGCATAATATACATGATTCAGTTTTTGGCAAGGCAATGTCTAGCGTTCAGAGGATCATCCAAGAAANTTTATGAGCGTGATAATGGGAATTTTCTTCATTTGGCAGAAACCGTAGCAAAATTTGATAATATTATGGCAGAACATTTATGCAGAATACAAACATTGACACCAAATAATATTACACATTATTTAGGGGATGAAATACAAAACCAAATAATTAAAATTATAGCAGATGCGATGAATGAAATCATTTTGAATAAGGTAAGAAATNCTAAATATTACTCAATTATTTTAGATACAACCCCTGATGTAAGCCATGTAGAACAGATAACAATTATTATTAGATTTGTGGATTTCCAAAATGCAAATATTTCTATATGTAAACATTTTGGGGGATTTTGTCCAGTAGATGACACAACTGGAGAAGGATTATATACATTTTTAGTAGACTACTTACAAAAACCGAATCTAGACAAAAATAATTTGAGAGGCCAGGGATACGACAATGCCACAAATATGCATGGAAAACATAACGGATTGCAACAGAAGATCCTCGAAAAATATTCTAGGGCATTCTATATTCCTTGTTCTGCGCATTCTTTAAACTTGGTAGTGAACGATGCAGCAAAAATCTCTTTTGACACCACTGAATTTTTTTATATNATCCAAGAACTATACAACTACTTTTCAGCTTCAACGAAACGTTGGAGTGTATTGAAAACACATTTACCAAACATAAATTTGAAACCATTGTCGAATACGCGATGGGAAAGTCGAGTTGATGCCATCATGCCACTAAAAACTCAATTAGAGGCAGTATGCAATGCTCTTTTAGAAATTNTTGATGATATTAATAAAGATATAGATTCTAGAATACAAGCCAAAGNTATACTTTCGAAAATATCCACTTTTAAATTTATTTGCTCAGTACTAATTTGGCATGATGTTTTAAGTAAAATTAATGTTATAAGCAAAATGATGCAGGAACCAAAATTCAATGTACATAATGCCCTTGAAAGCATCAAAGGGATTAAGAAATTCTTTGAAGAAAAACGAAGCGATGATGTTTATGAAAAATATATTATTGATGCTAAACAAATTGCAGAGTCTCTTGACATTGACGCCAACTTCTCCAATGTAGAAAATACTAGAAAAAGGAGAAAGAAGACTCATTTCGACTGCAAATCCCACGATCAGCCCATCTATGATCCAAAATTAAATTTCAAAATCAATTTCTTTTTTTCTATATTGGATACAACAATATCATCTTTAAAAGANAGGTTTACGATACCGAAAGAATATCATGGCCTTTTCAGTGTTCTAGATGACATGTGTAATTTGAAGAATTATAATGAATATGAACTACTGCAACTATGTAAAAATTTACAATTGAAATTGACTGATGAACATAGTAAGGAATGTGATATTGATGGGACATCAACGTACGAGGAACTAAAANCCTTAAGTTGTTTTCTAAAATCTAGTATNACTCCCGTTGAAGTATTGCAATATATTTGCAGCAATAATTTACCGGACACATTTCCGAATACTTTTGTAGCTCTCAGGATATATTTAACTTTGCCAATATCGGTCGCCAGTGGAGAACGTAGCTTCTCAAAATTAAAATTTATTAAAAACTACTTAAGGTCTACAATGTCACAAGAAAGACTGTCAAATCTAGCGACCATTTCTATAGAAAACGAGATATTGGAGCAAGTAAGCATTGAAACTGTCATAAAGAATTTTATTTCCATGAAAGCAAGACGTGTAACTATTTTATAACAAATTATTATATCCTAGTGACTTTGAGTTCCTAATTATTGTGATTAAAANTTCGAATTTTCTATTATTTTATGTTCAATAATTTGATTTGTATAATTTATACAGAATGACTTTATATTTGTTGTAATTGTTATTATTGAGAAATAAATAATATACTAACTTNAAAATTTTACTTGAGGAAGGGGCGCCTTTTTCTAATTCGCACAAAGGCGCCGTATGGGCTAGCAGCGGCCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod2 | PHOX2B | 3435 | 3446 | - | 17.23 | AAATCAAATTAT |
| Zaphod2 | DOF3.4 | 2726 | 2742 | - | 16.85 | TCTTCTTTCTCCTTTTT |
| Zaphod2 | E2F4 | 41 | 53 | - | 16.63 | ATGTGGCGCCCTT |
| Zaphod2 | PI | 1664 | 1677 | - | 16.27 | CCAAATGAAGAAAA |
| Zaphod2 | TCX2 | 1474 | 1488 | - | 16.27 | ATTTCAATTTTGAAT |
| Zaphod2 | TCX2 | 2788 | 2802 | + | 16.27 | AATTAAATTTCAAAA |
| Zaphod2 | TCX6 | 829 | 843 | - | 16.07 | TTTTAAAATTTTTTT |
| Zaphod2 | Zfp961 | 43 | 50 | + | 15.99 | GGGCGCCA |
| Zaphod2 | Zfp961 | 60 | 67 | + | 15.99 | GGGCGCCA |
| Zaphod2 | Zm00001d020595 | 4 | 13 | - | 15.90 | CGCGGCGGCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
