THE1D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000820 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 381 |
| Kimura value | 10.85 |
| Tau index | 0.9642 |
| Description | THE1D Long Terminal Repeat for ERVL-MaLR endogenous retrovirus |
| Comment | THE1D is 80% similar to THE1A, 84% to THE1B, and 89% to THE1C. |
| Sequence |
TGATATGGTTTGGCTGTGTCCCCACCCAAANTCTCATCTCGAATTGTAATCCCCATAATCCCCACGTGTCGAGGGAGGGACCTGGTGGAGGTGATTGGATCATGGGGGCGGTTTCCCCCATGCTGTTCTCGTGATAGTGAGTGAGTTCTCACGAGATCTGATGGTTTTATAAGTGTCTGGCAGNTTTCCCCTGCNCTCACNCTTCTCTCTCCTGCCGCCNTGTGAAGAAGGTGCTTGCTTCCCCTTCGCCTTCCGCCATGATTGTAAGTTTCCTGAGGCCTCCCCAGCCATGCGGAACTGTGAGTCAATTAAACCTCTTTCCTTTATAAATTACCCAGTCTCGGGTAGTTCTTTATAGCAGTGTGAAAACGGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| THE1D | RARA | 88 | 105 | + | -2.03 | GAGGTGATTGGATCATGG |
| THE1D | THI2 | 321 | 335 | - | -6.69 | GGTAATTTATAAAGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
