THE1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000818 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 364 |
| Kimura value | 9.49 |
| Tau index | 0.8640 |
| Description | THE1B Long Terminal Repeat for ERVL-MaLR endogenous retrovirus |
| Comment | An LTR of the THE1B retrovirus-like MaLR element. Has 5 bp TSDs. This subfamily is an intermediate between THE1A and THE1C, and is 90% similar to both over the entire length. |
| Sequence |
TGATATGGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTGTAGCTCCCATAATTCCCACGTGTCGTGGGAGGGACCCGGTGGGAGGTAATTGAATCATGGGGGCGGGTCTTTCCCGTGCTGTTCTCGTGATAGTGAATAAGTCTCACGAGATCTGATGGTTTTATAAAGGGGAGTTCCCCTGCACANGCTCTCTTGCCTGCCGCCATGTAAGACGTGNCTTTGCTCCTCCTTCGCCTTCCGCCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTGTGAGTCCATTAAACCTCTTTCCTTTATAAATTACCCAGTCTCGGGTATGTCTTTATCAGCAGCGTGAAAACGGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| THE1B | HES7 | 59 | 70 | - | 2.40 | CGACACGTGGGA |
| THE1B | GLI3 | 66 | 80 | - | 1.00 | GTCCCTCCCACGACA |
| THE1B | ZSCAN31 | 52 | 69 | + | -0.56 | CCATAATTCCCACGTGTC |
| THE1B | THI2 | 303 | 317 | - | -6.69 | GGTAATTTATAAAGG |
| THE1B | GLIS1 | 101 | 115 | - | -10.89 | AGACCCGCCCCCATG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
