THE1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000818 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 364 |
| Kimura value | 9.49 |
| Tau index | 0.8640 |
| Description | THE1B Long Terminal Repeat for ERVL-MaLR endogenous retrovirus |
| Comment | An LTR of the THE1B retrovirus-like MaLR element. Has 5 bp TSDs. This subfamily is an intermediate between THE1A and THE1C, and is 90% similar to both over the entire length. |
| Sequence |
TGATATGGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTGTAGCTCCCATAATTCCCACGTGTCGTGGGAGGGACCCGGTGGGAGGTAATTGAATCATGGGGGCGGGTCTTTCCCGTGCTGTTCTCGTGATAGTGAATAAGTCTCACGAGATCTGATGGTTTTATAAAGGGGAGTTCCCCTGCACANGCTCTCTTGCCTGCCGCCATGTAAGACGTGNCTTTGCTCCTCCTTCGCCTTCCGCCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTGTGAGTCCATTAAACCTCTTTCCTTTATAAATTACCCAGTCTCGGGTATGTCTTTATCAGCAGCGTGAAAACGGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| THE1B | KLF16 | 104 | 114 | - | 17.12 | GACCCGCCCCC |
| THE1B | IG1 | 203 | 211 | + | 16.76 | CTGCCGCCA |
| THE1B | BHLH72 | 269 | 277 | + | 16.71 | GCCACGTGG |
| THE1B | btd | 104 | 112 | + | 15.62 | GGGGGCGGG |
| THE1B | GT-3a | 54 | 67 | - | 15.50 | CACGTGGGAATTAT |
| THE1B | KLF4 | 20 | 27 | + | 15.48 | CCCCACCC |
| THE1B | DUX4 | 92 | 102 | + | 15.43 | TAATTGAATCA |
| THE1B | Spps | 104 | 114 | - | 15.41 | GACCCGCCCCC |
| THE1B | MYCN | 270 | 277 | + | 15.35 | CCACGTGG |
| THE1B | MYCN | 270 | 277 | - | 15.35 | CCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
