THE1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000818 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 364 |
| Kimura value | 9.49 |
| Tau index | 0.8640 |
| Description | THE1B Long Terminal Repeat for ERVL-MaLR endogenous retrovirus |
| Comment | An LTR of the THE1B retrovirus-like MaLR element. Has 5 bp TSDs. This subfamily is an intermediate between THE1A and THE1C, and is 90% similar to both over the entire length. |
| Sequence |
TGATATGGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTGTAGCTCCCATAATTCCCACGTGTCGTGGGAGGGACCCGGTGGGAGGTAATTGAATCATGGGGGCGGGTCTTTCCCGTGCTGTTCTCGTGATAGTGAATAAGTCTCACGAGATCTGATGGTTTTATAAAGGGGAGTTCCCCTGCACANGCTCTCTTGCCTGCCGCCATGTAAGACGTGNCTTTGCTCCTCCTTCGCCTTCCGCCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTGTGAGTCCATTAAACCTCTTTCCTTTATAAATTACCCAGTCTCGGGTATGTCTTTATCAGCAGCGTGAAAACGGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| THE1B | EmBP-1 | 61 | 68 | - | 14.49 | ACACGTGG |
| THE1B | CrebA | 268 | 279 | - | 14.48 | TTCCACGTGGCT |
| THE1B | ABI5 | 62 | 69 | - | 14.41 | GACACGTG |
| THE1B | mxl-1 | 270 | 277 | + | 14.33 | CCACGTGG |
| THE1B | mxl-1 | 270 | 277 | - | 14.33 | CCACGTGG |
| THE1B | Mnt | 270 | 276 | + | 14.31 | CCACGTG |
| THE1B | Mnt | 271 | 277 | - | 14.31 | CCACGTG |
| THE1B | Mnt | 61 | 67 | + | 14.31 | CCACGTG |
| THE1B | NFkb | 175 | 185 | - | 14.29 | GGGGAACTCCC |
| THE1B | CrebA | 268 | 279 | + | 14.11 | AGCCACGTGGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
