MSTB2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001134 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Primates |
| Length | 457 |
| Kimura value | 16.06 |
| Tau index | 0.8954 |
| Description | MSTB2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTTTGGATATGGTTTGTTTGTCCCCACCAAAACTCATGTTGAAATTTGATCCCCAATGTGGCGGTGTTGGGAGGTGGGGCCTAGTGGGAGGTGTTTGGGTCATGGGGGCGGATCCCTCATGAATGGCTTGGTGCCGTTCTCGCGGTAGTGAGTGAGTGAGTTCTCGCTCTCGCGAGACTGGATTAGTTCTCGCGGGAATGGATTAGTTCCCGCGAGAGTGGGTTGTTATAAAGCCAGGACGCCCCTCGGGTTTTGCCTCTTCGCACGTGTCCGCTTCCCCTTTGACCTTCTCCGCCATGTTNTGACGCAGCACGAAAGCCCTCACCAGAAGCCAGGGCCATGCCCTTGAACTTCCCAGCCTGCAGAACCGTGAGCTAAATAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGGTATTCTGTTATAGCAACACAAAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MSTB2 | RARA | 272 | 289 | - | -8.53 | AAGGGGAAGCGGACACGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
