MSTB2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001134 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Primates |
| Length | 457 |
| Kimura value | 16.06 |
| Tau index | 0.8954 |
| Description | MSTB2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTTTGGATATGGTTTGTTTGTCCCCACCAAAACTCATGTTGAAATTTGATCCCCAATGTGGCGGTGTTGGGAGGTGGGGCCTAGTGGGAGGTGTTTGGGTCATGGGGGCGGATCCCTCATGAATGGCTTGGTGCCGTTCTCGCGGTAGTGAGTGAGTGAGTTCTCGCTCTCGCGAGACTGGATTAGTTCTCGCGGGAATGGATTAGTTCCCGCGAGAGTGGGTTGTTATAAAGCCAGGACGCCCCTCGGGTTTTGCCTCTTCGCACGTGTCCGCTTCCCCTTTGACCTTCTCCGCCATGTTNTGACGCAGCACGAAAGCCCTCACCAGAAGCCAGGGCCATGCCCTTGAACTTCCCAGCCTGCAGAACCGTGAGCTAAATAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGGTATTCTGTTATAGCAACACAAAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MSTB2 | NR6A1 | 348 | 361 | - | 19.63 | GAAGTTCAAGGGCA |
| MSTB2 | ZBTB33 | 175 | 184 | + | 17.64 | TCTCGCGAGA |
| MSTB2 | ZBTB33 | 175 | 184 | - | 17.64 | TCTCGCGAGA |
| MSTB2 | BMY2 | 268 | 278 | - | 17.07 | GACACGTGCGA |
| MSTB2 | BEH3 | 269 | 278 | + | 16.52 | CGCACGTGTC |
| MSTB2 | NR5A1 | 348 | 359 | - | 16.07 | AGTTCAAGGGCA |
| MSTB2 | ZBTB33 | 195 | 204 | + | 15.95 | TCTCGCGGGA |
| MSTB2 | ZBTB33 | 215 | 224 | - | 15.95 | TCTCGCGGGA |
| MSTB2 | NR2C2 | 283 | 296 | - | 15.93 | AAGGTCAAAGGGGA |
| MSTB2 | BEH4 | 269 | 278 | + | 15.92 | CGCACGTGTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
