MSTB2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001134 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Primates |
| Length | 457 |
| Kimura value | 16.06 |
| Tau index | 0.8954 |
| Description | MSTB2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTTTGGATATGGTTTGTTTGTCCCCACCAAAACTCATGTTGAAATTTGATCCCCAATGTGGCGGTGTTGGGAGGTGGGGCCTAGTGGGAGGTGTTTGGGTCATGGGGGCGGATCCCTCATGAATGGCTTGGTGCCGTTCTCGCGGTAGTGAGTGAGTGAGTTCTCGCTCTCGCGAGACTGGATTAGTTCTCGCGGGAATGGATTAGTTCCCGCGAGAGTGGGTTGTTATAAAGCCAGGACGCCCCTCGGGTTTTGCCTCTTCGCACGTGTCCGCTTCCCCTTTGACCTTCTCCGCCATGTTNTGACGCAGCACGAAAGCCCTCACCAGAAGCCAGGGCCATGCCCTTGAACTTCCCAGCCTGCAGAACCGTGAGCTAAATAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGGTATTCTGTTATAGCAACACAAAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MSTB2 | PK15505.1 | 270 | 277 | + | 14.75 | GCACGTGT |
| MSTB2 | PRDM9 | 278 | 297 | - | 14.67 | GAAGGTCAAAGGGGAAGCGG |
| MSTB2 | ARALYDRAFT_493022 | 81 | 88 | - | 14.64 | GGCCCCAC |
| MSTB2 | PPARD | 283 | 296 | - | 14.53 | AAGGTCAAAGGGGA |
| MSTB2 | HES6 | 269 | 278 | + | 14.48 | CGCACGTGTC |
| MSTB2 | ZBTB33 | 145 | 154 | + | 14.42 | TCTCGCGGTA |
| MSTB2 | ABI5 | 271 | 278 | - | 14.41 | GACACGTG |
| MSTB2 | ZNF766 | 385 | 393 | + | 14.38 | AATAAACCT |
| MSTB2 | BAM8 | 270 | 278 | - | 14.27 | GACACGTGC |
| MSTB2 | TFDP1 | 198 | 205 | + | 14.24 | CGCGGGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
