MSTB2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001134 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Primates |
| Length | 457 |
| Kimura value | 16.06 |
| Tau index | 0.8954 |
| Description | MSTB2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTTTGGATATGGTTTGTTTGTCCCCACCAAAACTCATGTTGAAATTTGATCCCCAATGTGGCGGTGTTGGGAGGTGGGGCCTAGTGGGAGGTGTTTGGGTCATGGGGGCGGATCCCTCATGAATGGCTTGGTGCCGTTCTCGCGGTAGTGAGTGAGTGAGTTCTCGCTCTCGCGAGACTGGATTAGTTCTCGCGGGAATGGATTAGTTCCCGCGAGAGTGGGTTGTTATAAAGCCAGGACGCCCCTCGGGTTTTGCCTCTTCGCACGTGTCCGCTTCCCCTTTGACCTTCTCCGCCATGTTNTGACGCAGCACGAAAGCCCTCACCAGAAGCCAGGGCCATGCCCTTGAACTTCCCAGCCTGCAGAACCGTGAGCTAAATAAACCTCTTTTCTTTATAAATTACCCAGTCTCAGGTATTCTGTTATAGCAACACAAAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MSTB2 | btd | 111 | 119 | + | 15.92 | GGGGGCGGA |
| MSTB2 | Clamp | 167 | 180 | - | 15.74 | GCGAGAGCGAGAAC |
| MSTB2 | Zfp809 | 359 | 367 | + | 15.73 | TTCCCAGCC |
| MSTB2 | BEH2 | 269 | 278 | - | 15.64 | GACACGTGCG |
| MSTB2 | NR2F1 | 283 | 295 | - | 15.53 | AGGTCAAAGGGGA |
| MSTB2 | ZNF274 | 162 | 173 | + | 15.49 | AGTGAGTTCTCG |
| MSTB2 | ARALYDRAFT_495258 | 81 | 88 | - | 15.43 | GGCCCCAC |
| MSTB2 | ARALYDRAFT_484486 | 81 | 88 | - | 15.43 | GGCCCCAC |
| MSTB2 | THRB | 283 | 295 | - | 15.39 | AGGTCAAAGGGGA |
| MSTB2 | Pparg::Rxra | 283 | 295 | - | 15.34 | AGGTCAAAGGGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
