MLT2B3

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001031
TE superfamily	ERV3
TE order	LTR
Species	Primates
Length	554
Kimura value	14.74
Tau index	0.9340
Description	MLT2B3 Long Terminal Repeat for ERVL endogenous retrovirus
Comment	MLT2B3 is an ERVL LTR. However, a related LTR was "absorbed" by a mobile Ricksha DNA transposon; explaining this cross-Type homology. MLT2B3 contains a 50bp insertion compared to the otherwise closely related MLT2B2 variant.
Sequence	TGTGATGGTTAATATTAGGTGTCAACTTGATTGGATTGAAGGATGCCNAGATAGCTGGTAAAGTATTGTTTCTGGGTGTGTCTGTGAGGGTGTTGCCAGAGGAGATTAACATTTGAGTCAGTGGACTGGGAGAGGAAGACCCACCCTCANCGATGTGGGTGGGCACCATCCAATCGGCTGCCGGCNCGGCTAGAACAAAAAGGCAGAGGAAGGGCGAATTTGCTCTCTCTCCTGGAGCTGGGACACCCTTCTCCTCCTGCCCTCGGACATCAGANCTCCAGGTTCTTCGGCCTTTGGACTCTNGGACTTACACCAGCGGTTTNCCGGGCTCTCGGGCCTTCGGCCACAGACTGAAGGCTGCACCGTCGGCTTCCCTGCTTTTGAGGCTTTNGGACTCGGACTGAGCCACGCTACCGGCTTCCCTGGCTCCCCAGCTTGCAGACGGCCTATCGTGGGACTTCNCGGCCTTCGTGATCGTGTGAGCCAATTCCCCTAATAAATCCCCTTTATCTATCCTATTAGTTCTGTCCCTCTGGAGAACCCTGACTAATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT2B3	TBX2	17	25	+	13.29	AGGTGTCAA
MLT2B3	dar1	138	148	+	13.28	GACCCACCCTC
MLT2B3	daf-12	74	87	+	13.28	GGGTGTGTCTGTGA
MLT2B3	BATF3	114	120	-	13.14	TGACTCA
MLT2B3	RELB	487	493	+	13.14	ATTCCCC
MLT2B3	SMZ	261	268	+	13.13	CCTCGGAC
MLT2B3	TBX18	17	25	+	13.11	AGGTGTCAA
MLT2B3	RPH1	490	496	+	13.07	CCCCTAA
MLT2B3	DOF4.5	498	510	-	13.06	ATAAAGGGGATTT
MLT2B3	RAMOSA1	220	233	-	13.04	AGGAGAGAGAGCAA

1 2 3 4 5 6 ... 18

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).