MLT2B3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001031 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Primates |
| Length | 554 |
| Kimura value | 14.74 |
| Tau index | 0.9340 |
| Description | MLT2B3 Long Terminal Repeat for ERVL endogenous retrovirus |
| Comment | MLT2B3 is an ERVL LTR. However, a related LTR was "absorbed" by a mobile Ricksha DNA transposon; explaining this cross-Type homology. MLT2B3 contains a 50bp insertion compared to the otherwise closely related MLT2B2 variant. |
| Sequence |
TGTGATGGTTAATATTAGGTGTCAACTTGATTGGATTGAAGGATGCCNAGATAGCTGGTAAAGTATTGTTTCTGGGTGTGTCTGTGAGGGTGTTGCCAGAGGAGATTAACATTTGAGTCAGTGGACTGGGAGAGGAAGACCCACCCTCANCGATGTGGGTGGGCACCATCCAATCGGCTGCCGGCNCGGCTAGAACAAAAAGGCAGAGGAAGGGCGAATTTGCTCTCTCTCCTGGAGCTGGGACACCCTTCTCCTCCTGCCCTCGGACATCAGANCTCCAGGTTCTTCGGCCTTTGGACTCTNGGACTTACACCAGCGGTTTNCCGGGCTCTCGGGCCTTCGGCCACAGACTGAAGGCTGCACCGTCGGCTTCCCTGCTTTTGAGGCTTTNGGACTCGGACTGAGCCACGCTACCGGCTTCCCTGGCTCCCCAGCTTGCAGACGGCCTATCGTGGGACTTCNCGGCCTTCGTGATCGTGTGAGCCAATTCCCCTAATAAATCCCCTTTATCTATCCTATTAGTTCTGTCCCTCTGGAGAACCCTGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT2B3 | ZNF454 | 327 | 343 | + | 19.75 | GGCTCTCGGGCCTTCGG |
| MLT2B3 | ZNF16 | 415 | 435 | - | 16.61 | GCTGGGGAGCCAGGGAAGCCG |
| MLT2B3 | HNF4 | 287 | 300 | + | 16.56 | TCGGCCTTTGGACT |
| MLT2B3 | HNF4A | 288 | 301 | - | 16.44 | GAGTCCAAAGGCCG |
| MLT2B3 | ci | 155 | 165 | - | 15.54 | TGCCCACCCAC |
| MLT2B3 | DOF4.2 | 197 | 207 | + | 15.06 | AAAAAGGCAGA |
| MLT2B3 | GLI3 | 151 | 165 | - | 15.02 | TGCCCACCCACATCG |
| MLT2B3 | Trl | 223 | 231 | - | 14.81 | GAGAGAGAG |
| MLT2B3 | Gli2 | 156 | 164 | - | 14.33 | GCCCACCCA |
| MLT2B3 | dar1 | 72 | 82 | - | 14.25 | GACACACCCAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
