MLT2B3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001031 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Primates |
| Length | 554 |
| Kimura value | 14.74 |
| Tau index | 0.9340 |
| Description | MLT2B3 Long Terminal Repeat for ERVL endogenous retrovirus |
| Comment | MLT2B3 is an ERVL LTR. However, a related LTR was "absorbed" by a mobile Ricksha DNA transposon; explaining this cross-Type homology. MLT2B3 contains a 50bp insertion compared to the otherwise closely related MLT2B2 variant. |
| Sequence |
TGTGATGGTTAATATTAGGTGTCAACTTGATTGGATTGAAGGATGCCNAGATAGCTGGTAAAGTATTGTTTCTGGGTGTGTCTGTGAGGGTGTTGCCAGAGGAGATTAACATTTGAGTCAGTGGACTGGGAGAGGAAGACCCACCCTCANCGATGTGGGTGGGCACCATCCAATCGGCTGCCGGCNCGGCTAGAACAAAAAGGCAGAGGAAGGGCGAATTTGCTCTCTCTCCTGGAGCTGGGACACCCTTCTCCTCCTGCCCTCGGACATCAGANCTCCAGGTTCTTCGGCCTTTGGACTCTNGGACTTACACCAGCGGTTTNCCGGGCTCTCGGGCCTTCGGCCACAGACTGAAGGCTGCACCGTCGGCTTCCCTGCTTTTGAGGCTTTNGGACTCGGACTGAGCCACGCTACCGGCTTCCCTGGCTCCCCAGCTTGCAGACGGCCTATCGTGGGACTTCNCGGCCTTCGTGATCGTGTGAGCCAATTCCCCTAATAAATCCCCTTTATCTATCCTATTAGTTCTGTCCCTCTGGAGAACCCTGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT2B3 | IXR1 | 406 | 420 | - | 1.38 | AAGCCGGTAGCGTGG |
| MLT2B3 | BPC1 | 194 | 217 | + | -1.32 | AACAAAAAGGCAGAGGAAGGGCGA |
| MLT2B3 | RARA | 247 | 264 | - | -11.06 | GAGGGCAGGAGGAGAAGG |
| MLT2B3 | BPC5 | 195 | 224 | + | -43.68 | ACAAAAAGGCAGAGGAAGGGCGAATTTGCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
