MLT1M
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001024 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 672 |
| Kimura value | 31.49 |
| Tau index | 0.9620 |
| Description | MLT1M Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1M has 5 bp TSD. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTACTAGACATGTCAATCACGGTGCCTGCCACGCCCACAGCCCCTTCTAAGGGAAACTGCCCCGCCCACAGCCCCTGCTGAAGGGGCAGCCCTAGGCGGCCATGTTTTGTACCACGTGACCCTGCCCTCCCCTGGCCACAGCTGATTGGACCAGGGGTGGGCACCTGACCCAAGGGCAGCCAATCCATAGGCTGGCCAGCGACCTATGACGTGGCCTGGCGCGAAAAGATGAGCTGGGCCAATCAGATTCTCTCTCTCGGGAATTTGAACTGGGAAACACGGAGAGAATGAGGCAGTTAGCAGCGGGAGCTGAAGCTGAAAGGATGCATAGAGAGAAGCCATGAGGTAGAGTCGGGGCCATGATGGGCCATGTGCAAGCCGAAGTTATGAGGAAGCAGAAACTATGAGTAAGCAGAGGAAGCCGGTCGGTAGAGAGAAGAGAACGGAGCAGACGCGCAGAGAGAAGCNGAGACGCGTGATGAGAGAGGGACCGGACGAGAGCNGCNGAGGTCCCTAGAGCTGCCCCGGTTCCGGCCGCTTCCAGTCCCTGTTCCTGGCGNTTTCCCAGTTCCAGTTCCGGTCCACGTGTATCCTTACAATAAACCCCCCTTTTCTTGAGNTAACTTGAGTGAGTCTCTGTTCCTTGCAACCAAAAGAGCCTAACTAAAACA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1M | TFEC | 114 | 121 | + | 15.88 | CACGTGAC |
| MLT1M | YAP7 | 405 | 415 | + | 15.81 | ATGAGTAAGCA |
| MLT1M | KLF12 | 61 | 69 | - | 15.81 | TGGGCGGGG |
| MLT1M | luna | 29 | 37 | + | 15.75 | GCCACGCCC |
| MLT1M | KLF7 | 61 | 68 | - | 15.72 | GGGCGGGG |
| MLT1M | CREB3L4 | 207 | 216 | - | 15.67 | GCCACGTCAT |
| MLT1M | ERF::FIGLA | 584 | 596 | - | 15.65 | AAGGATACACGTG |
| MLT1M | KLF3 | 28 | 37 | + | 15.64 | TGCCACGCCC |
| MLT1M | KLF1 | 61 | 68 | - | 15.53 | GGGCGGGG |
| MLT1M | KLF6 | 30 | 38 | + | 15.53 | CCACGCCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
