MLT1M
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001024 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Theria_mammals |
| Length | 672 |
| Kimura value | 31.49 |
| Tau index | 0.9620 |
| Description | MLT1M Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1M has 5 bp TSD. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTACTAGACATGTCAATCACGGTGCCTGCCACGCCCACAGCCCCTTCTAAGGGAAACTGCCCCGCCCACAGCCCCTGCTGAAGGGGCAGCCCTAGGCGGCCATGTTTTGTACCACGTGACCCTGCCCTCCCCTGGCCACAGCTGATTGGACCAGGGGTGGGCACCTGACCCAAGGGCAGCCAATCCATAGGCTGGCCAGCGACCTATGACGTGGCCTGGCGCGAAAAGATGAGCTGGGCCAATCAGATTCTCTCTCTCGGGAATTTGAACTGGGAAACACGGAGAGAATGAGGCAGTTAGCAGCGGGAGCTGAAGCTGAAAGGATGCATAGAGAGAAGCCATGAGGTAGAGTCGGGGCCATGATGGGCCATGTGCAAGCCGAAGTTATGAGGAAGCAGAAACTATGAGTAAGCAGAGGAAGCCGGTCGGTAGAGAGAAGAGAACGGAGCAGACGCGCAGAGAGAAGCNGAGACGCGTGATGAGAGAGGGACCGGACGAGAGCNGCNGAGGTCCCTAGAGCTGCCCCGGTTCCGGCCGCTTCCAGTCCCTGTTCCTGGCGNTTTCCCAGTTCCAGTTCCGGTCCACGTGTATCCTTACAATAAACCCCCCTTTTCTTGAGNTAACTTGAGTGAGTCTCTGTTCCTTGCAACCAAAAGAGCCTAACTAAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1M | ZNF582 | 637 | 655 | + | 23.96 | TCTGTTCCTTGCAACCAAA |
| MLT1M | CG3065 | 29 | 39 | + | 20.86 | GCCACGCCCAC |
| MLT1M | Klf6-7-like | 25 | 44 | + | 20.51 | GCCTGCCACGCCCACAGCCC |
| MLT1M | SP3 | 29 | 39 | + | 19.71 | GCCACGCCCAC |
| MLT1M | Spps | 60 | 70 | + | 19.10 | GCCCCGCCCAC |
| MLT1M | CG7928 | 151 | 162 | - | 18.62 | CCCACCCCTGGT |
| MLT1M | Klf15 | 24 | 45 | + | 18.32 | TGCCTGCCACGCCCACAGCCCC |
| MLT1M | Spps | 29 | 39 | + | 18.20 | GCCACGCCCAC |
| MLT1M | SP3 | 60 | 70 | + | 18.02 | GCCCCGCCCAC |
| MLT1M | KLF9 | 29 | 39 | + | 17.99 | GCCACGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
