MLT1M
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001024 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Theria_mammals |
| Length | 672 |
| Kimura value | 31.49 |
| Tau index | 0.9620 |
| Description | MLT1M Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1M has 5 bp TSD. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTACTAGACATGTCAATCACGGTGCCTGCCACGCCCACAGCCCCTTCTAAGGGAAACTGCCCCGCCCACAGCCCCTGCTGAAGGGGCAGCCCTAGGCGGCCATGTTTTGTACCACGTGACCCTGCCCTCCCCTGGCCACAGCTGATTGGACCAGGGGTGGGCACCTGACCCAAGGGCAGCCAATCCATAGGCTGGCCAGCGACCTATGACGTGGCCTGGCGCGAAAAGATGAGCTGGGCCAATCAGATTCTCTCTCTCGGGAATTTGAACTGGGAAACACGGAGAGAATGAGGCAGTTAGCAGCGGGAGCTGAAGCTGAAAGGATGCATAGAGAGAAGCCATGAGGTAGAGTCGGGGCCATGATGGGCCATGTGCAAGCCGAAGTTATGAGGAAGCAGAAACTATGAGTAAGCAGAGGAAGCCGGTCGGTAGAGAGAAGAGAACGGAGCAGACGCGCAGAGAGAAGCNGAGACGCGTGATGAGAGAGGGACCGGACGAGAGCNGCNGAGGTCCCTAGAGCTGCCCCGGTTCCGGCCGCTTCCAGTCCCTGTTCCTGGCGNTTTCCCAGTTCCAGTTCCGGTCCACGTGTATCCTTACAATAAACCCCCCTTTTCTTGAGNTAACTTGAGTGAGTCTCTGTTCCTTGCAACCAAAAGAGCCTAACTAAAACA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1M | SP8 | 30 | 40 | + | 16.53 | CCACGCCCACA |
| MLT1M | Klf6-7-like | 56 | 75 | + | 16.46 | AACTGCCCCGCCCACAGCCC |
| MLT1M | Klf15 | 55 | 76 | + | 16.32 | AAACTGCCCCGCCCACAGCCCC |
| MLT1M | KLF15 | 61 | 68 | + | 16.27 | CCCCGCCC |
| MLT1M | KLF5 | 60 | 69 | + | 16.20 | GCCCCGCCCA |
| MLT1M | OsbZIP77 | 206 | 217 | - | 16.20 | GGCCACGTCATA |
| MLT1M | KLF14 | 61 | 69 | - | 16.15 | TGGGCGGGG |
| MLT1M | XBP1 | 206 | 216 | - | 16.10 | GCCACGTCATA |
| MLT1M | SP9 | 61 | 70 | + | 15.96 | CCCCGCCCAC |
| MLT1M | ceh-60 | 12 | 20 | - | 15.89 | TGATTGACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
