MLT1M
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001024 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 672 |
| Kimura value | 31.49 |
| Tau index | 0.9620 |
| Description | MLT1M Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1M has 5 bp TSD. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTACTAGACATGTCAATCACGGTGCCTGCCACGCCCACAGCCCCTTCTAAGGGAAACTGCCCCGCCCACAGCCCCTGCTGAAGGGGCAGCCCTAGGCGGCCATGTTTTGTACCACGTGACCCTGCCCTCCCCTGGCCACAGCTGATTGGACCAGGGGTGGGCACCTGACCCAAGGGCAGCCAATCCATAGGCTGGCCAGCGACCTATGACGTGGCCTGGCGCGAAAAGATGAGCTGGGCCAATCAGATTCTCTCTCTCGGGAATTTGAACTGGGAAACACGGAGAGAATGAGGCAGTTAGCAGCGGGAGCTGAAGCTGAAAGGATGCATAGAGAGAAGCCATGAGGTAGAGTCGGGGCCATGATGGGCCATGTGCAAGCCGAAGTTATGAGGAAGCAGAAACTATGAGTAAGCAGAGGAAGCCGGTCGGTAGAGAGAAGAGAACGGAGCAGACGCGCAGAGAGAAGCNGAGACGCGTGATGAGAGAGGGACCGGACGAGAGCNGCNGAGGTCCCTAGAGCTGCCCCGGTTCCGGCCGCTTCCAGTCCCTGTTCCTGGCGNTTTCCCAGTTCCAGTTCCGGTCCACGTGTATCCTTACAATAAACCCCCCTTTTCTTGAGNTAACTTGAGTGAGTCTCTGTTCCTTGCAACCAAAAGAGCCTAACTAAAACA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1M | KLF11 | 30 | 39 | + | 17.79 | CCACGCCCAC |
| MLT1M | KLF16 | 29 | 39 | + | 17.57 | GCCACGCCCAC |
| MLT1M | CG3065 | 60 | 70 | + | 17.44 | GCCCCGCCCAC |
| MLT1M | Usf | 112 | 121 | + | 17.05 | ACCACGTGAC |
| MLT1M | dar1 | 29 | 39 | + | 17.00 | GCCACGCCCAC |
| MLT1M | bZIP911 | 206 | 217 | + | 16.99 | TATGACGTGGCC |
| MLT1M | SP9 | 30 | 39 | + | 16.80 | CCACGCCCAC |
| MLT1M | CREB3 | 206 | 217 | - | 16.77 | GGCCACGTCATA |
| MLT1M | Klf3/8/12 | 29 | 37 | + | 16.60 | GCCACGCCC |
| MLT1M | KLF16 | 60 | 70 | + | 16.53 | GCCCCGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
