MLT1L

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001023
TE superfamily	MaLR
TE order	LTR
Species	Theria_mammals
Length	610
Kimura value	31.89
Tau index	0.9557
Description	MLT1L Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1L has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGCAGACACTGTTGGTTGCCTACCCAACAGCCATTCTCCCCTTCTTCCTTGCTAACAGAACCCCGATTTTGTTCAGGTATCNGGCGGCCATGTGCTTCAGGGGAGGCTGGNCCCCTCCCCAGCCCCAGGGGGTGAATCNTGATTGGTCTAAGCCAATCATGGTAATCCCATTCCCCTTGCCAGTGATTGGTTTAGGAATGGGCATGTGACNCAATTCTGGCCAATGAGACGTGAGGGGAAGTCTGCTGGGGGGCTTCTGGGAAAGNTTTCCTCGCTCTTAAAAAAAGGACATAAGGAAGAGATGTCCTCTTTTCTTGCCTCTGGACGTTGTCGTGTGNGGATGTGATGCCTGGAGCTGCNGCAGCCATCTTGCGACCATGAGGGGACAAGCCTGAGAGGAAAAGCCAACACGCTGAGGATGGCAGAGCGGAAAGATGGAAAGAACCTGGGTCCTTGATGACATCGTTGAGCCGCTGAATTAACCAACCCTGGAACCGCCCTACCTCCGGACTTCTTGTTATGTGAGATAATAAATTTTCCTTATTGTTTAAGCCANTTTGAGTTGGGTTTTCTGTTACTTGCAGCCGAAAGCATCCTAACTGATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1L	ARF36	384	395	+	14.53	AGGGGACAAGCC
MLT1L	ZmbZIP25	459	468	+	14.48	GATGACATCG
MLT1L	ZmbZIP72	459	468	+	14.34	GATGACATCG
MLT1L	SP2	115	123	-	14.29	GGGGAGGGG
MLT1L	lmd	246	257	-	14.28	GCCCCCCAGCAG
MLT1L	NAC050	577	584	-	14.21	CAAGTAAC
MLT1L	nfya-1	186	195	-	14.20	AACCAATCAC
MLT1L	Ebf4	125	135	+	14.10	GCCCCAGGGGG
MLT1L	ZmbZIP25	458	467	-	14.04	GATGTCATCA
MLT1L	HAP3	143	151	+	14.04	TGATTGGTC

1 2 3 4 5 6 ... 26

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).