MLT1L
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001023 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Theria_mammals |
| Length | 610 |
| Kimura value | 31.89 |
| Tau index | 0.9557 |
| Description | MLT1L Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1L has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGACACTGTTGGTTGCCTACCCAACAGCCATTCTCCCCTTCTTCCTTGCTAACAGAACCCCGATTTTGTTCAGGTATCNGGCGGCCATGTGCTTCAGGGGAGGCTGGNCCCCTCCCCAGCCCCAGGGGGTGAATCNTGATTGGTCTAAGCCAATCATGGTAATCCCATTCCCCTTGCCAGTGATTGGTTTAGGAATGGGCATGTGACNCAATTCTGGCCAATGAGACGTGAGGGGAAGTCTGCTGGGGGGCTTCTGGGAAAGNTTTCCTCGCTCTTAAAAAAAGGACATAAGGAAGAGATGTCCTCTTTTCTTGCCTCTGGACGTTGTCGTGTGNGGATGTGATGCCTGGAGCTGCNGCAGCCATCTTGCGACCATGAGGGGACAAGCCTGAGAGGAAAAGCCAACACGCTGAGGATGGCAGAGCGGAAAGATGGAAAGAACCTGGGTCCTTGATGACATCGTTGAGCCGCTGAATTAACCAACCCTGGAACCGCCCTACCTCCGGACTTCTTGTTATGTGAGATAATAAATTTTCCTTATTGTTTAAGCCANTTTGAGTTGGGTTTTCTGTTACTTGCAGCCGAAAGCATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1L | EWSR1-FLI1 | 34 | 51 | - | 0.87 | GGAAGAAGGGGAGAATGG |
| MLT1L | TP63 | 378 | 395 | + | -3.21 | ACCATGAGGGGACAAGCC |
| MLT1L | GLIS1 | 230 | 244 | - | -6.49 | CTTCCCCTCACGTCT |
| MLT1L | ZSCAN16 | 50 | 67 | + | -7.51 | CCTTGCTAACAGAACCCC |
| MLT1L | EWSR1-FLI1 | 432 | 449 | + | -12.37 | GGAAAGATGGAAAGAACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
