MLT1L
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001023 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 610 |
| Kimura value | 31.89 |
| Tau index | 0.9557 |
| Description | MLT1L Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1L has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGACACTGTTGGTTGCCTACCCAACAGCCATTCTCCCCTTCTTCCTTGCTAACAGAACCCCGATTTTGTTCAGGTATCNGGCGGCCATGTGCTTCAGGGGAGGCTGGNCCCCTCCCCAGCCCCAGGGGGTGAATCNTGATTGGTCTAAGCCAATCATGGTAATCCCATTCCCCTTGCCAGTGATTGGTTTAGGAATGGGCATGTGACNCAATTCTGGCCAATGAGACGTGAGGGGAAGTCTGCTGGGGGGCTTCTGGGAAAGNTTTCCTCGCTCTTAAAAAAAGGACATAAGGAAGAGATGTCCTCTTTTCTTGCCTCTGGACGTTGTCGTGTGNGGATGTGATGCCTGGAGCTGCNGCAGCCATCTTGCGACCATGAGGGGACAAGCCTGAGAGGAAAAGCCAACACGCTGAGGATGGCAGAGCGGAAAGATGGAAAGAACCTGGGTCCTTGATGACATCGTTGAGCCGCTGAATTAACCAACCCTGGAACCGCCCTACCTCCGGACTTCTTGTTATGTGAGATAATAAATTTTCCTTATTGTTTAAGCCANTTTGAGTTGGGTTTTCTGTTACTTGCAGCCGAAAGCATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1L | Stat5a::Stat5b | 258 | 266 | - | 15.12 | TTCCCAGAA |
| MLT1L | HAP3 | 154 | 162 | - | 15.11 | TGATTGGCT |
| MLT1L | EBF1 | 125 | 135 | + | 15.06 | GCCCCAGGGGG |
| MLT1L | Stat4 | 258 | 267 | + | 15.02 | TTCTGGGAAA |
| MLT1L | DUX4 | 187 | 197 | - | 15.00 | TAAACCAATCA |
| MLT1L | GSM1 | 504 | 513 | + | 14.89 | TACCTCCGGA |
| MLT1L | ZIM3 | 570 | 580 | - | 14.78 | TAACAGAAAAC |
| MLT1L | TFAP2B | 124 | 136 | - | 14.72 | ACCCCCTGGGGCT |
| MLT1L | USF1 | 204 | 213 | + | 14.62 | GGCATGTGAC |
| MLT1L | ZNF214 | 451 | 463 | - | 14.57 | TCATCAAGGACCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
