MLT1J1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001019 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 444 |
| Kimura value | 30.52 |
| Tau index | 0.9148 |
| Description | MLT1J1 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGGCTAGCTGTTCACCAAACCCGTTTCCTCTTCTTCCTGGGCACACAGCTAGACTACATTTCCCAGCCTCCCTTGCAGTTAGGTGTGGCCATGTGACTGAGTTCTGGCCAATGGAATGTGAGCAGAAGTGATGTGTGCCACTTCCAGGCCTGGCCCATAAAAACCTCCCATGCATNCTCCTCTCTATTCTCTCTTCCCTCTCTGCTGGCTGGATGTCGACGCCCAGGGCGACCTTGGAAGCCACGTGTTGAAGATGGCAGAGCCTCCGTCAGCCTGGGTCCCTGAATGACTGCGTGGAGCAGAGCCCCCCCCNACCCCCCCAGCACATCCAATTGGACTTTACGTGAGCGAGAAATAAACTTCTATTGTGTTAAGCCACTGAGATTTTGGGGTTTATCTGTTACAGCAGCTAGCGTTACCTTAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J1 | Npas2 | 253 | 260 | + | 13.77 | CCACGTGT |
| MLT1J1 | HEY2 | 252 | 260 | + | 13.76 | GCCACGTGT |
| MLT1J1 | l(3)neo38 | 317 | 323 | + | 13.75 | CCCCCCC |
| MLT1J1 | l(3)neo38 | 318 | 324 | + | 13.75 | CCCCCCC |
| MLT1J1 | l(3)neo38 | 327 | 333 | + | 13.75 | CCCCCCC |
| MLT1J1 | ABI5 | 252 | 259 | + | 13.74 | GCCACGTG |
| MLT1J1 | PIF3 | 253 | 259 | + | 13.71 | CCACGTG |
| MLT1J1 | OJ1058_F05.8 | 253 | 260 | + | 13.67 | CCACGTGT |
| MLT1J1 | Os05g0437700 | 253 | 260 | - | 13.67 | ACACGTGG |
| MLT1J1 | grh | 29 | 38 | + | 13.55 | AAACCCGTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
