MLT1J1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001019 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 444 |
| Kimura value | 30.52 |
| Tau index | 0.9148 |
| Description | MLT1J1 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGGCTAGCTGTTCACCAAACCCGTTTCCTCTTCTTCCTGGGCACACAGCTAGACTACATTTCCCAGCCTCCCTTGCAGTTAGGTGTGGCCATGTGACTGAGTTCTGGCCAATGGAATGTGAGCAGAAGTGATGTGTGCCACTTCCAGGCCTGGCCCATAAAAACCTCCCATGCATNCTCCTCTCTATTCTCTCTTCCCTCTCTGCTGGCTGGATGTCGACGCCCAGGGCGACCTTGGAAGCCACGTGTTGAAGATGGCAGAGCCTCCGTCAGCCTGGGTCCCTGAATGACTGCGTGGAGCAGAGCCCCCCCCNACCCCCCCAGCACATCCAATTGGACTTTACGTGAGCGAGAAATAAACTTCTATTGTGTTAAGCCACTGAGATTTTGGGGTTTATCTGTTACAGCAGCTAGCGTTACCTTAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J1 | Thap11 | 65 | 78 | + | 21.93 | ACTACATTTCCCAG |
| MLT1J1 | ZNF768 | 208 | 216 | + | 16.08 | CCCTCTCTG |
| MLT1J1 | Creb3l2 | 252 | 260 | + | 15.96 | GCCACGTGT |
| MLT1J1 | USF1 | 100 | 109 | + | 15.90 | GCCATGTGAC |
| MLT1J1 | insv | 339 | 350 | - | 15.78 | GTCCAATTGGAT |
| MLT1J1 | insv | 339 | 350 | + | 15.77 | ATCCAATTGGAC |
| MLT1J1 | Zfp809 | 72 | 80 | + | 15.73 | TTCCCAGCC |
| MLT1J1 | NFYB | 118 | 126 | - | 15.68 | CCATTGGCC |
| MLT1J1 | ZNF331 | 310 | 319 | + | 15.68 | AGCAGAGCCC |
| MLT1J1 | FEZF2 | 74 | 81 | + | 15.03 | CCCAGCCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
