MLT1J1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001019 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 444 |
| Kimura value | 30.52 |
| Tau index | 0.9148 |
| Description | MLT1J1 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGGCTAGCTGTTCACCAAACCCGTTTCCTCTTCTTCCTGGGCACACAGCTAGACTACATTTCCCAGCCTCCCTTGCAGTTAGGTGTGGCCATGTGACTGAGTTCTGGCCAATGGAATGTGAGCAGAAGTGATGTGTGCCACTTCCAGGCCTGGCCCATAAAAACCTCCCATGCATNCTCCTCTCTATTCTCTCTTCCCTCTCTGCTGGCTGGATGTCGACGCCCAGGGCGACCTTGGAAGCCACGTGTTGAAGATGGCAGAGCCTCCGTCAGCCTGGGTCCCTGAATGACTGCGTGGAGCAGAGCCCCCCCCNACCCCCCCAGCACATCCAATTGGACTTTACGTGAGCGAGAAATAAACTTCTATTGTGTTAAGCCACTGAGATTTTGGGGTTTATCTGTTACAGCAGCTAGCGTTACCTTAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J1 | TRP1 | 392 | 412 | - | -3.69 | CAGATAAACCCCAAAATCTCA |
| MLT1J1 | ZNF410 | 162 | 177 | + | -4.27 | CTGGCCCATAAAAACC |
| MLT1J1 | AT4G12670 | 380 | 408 | - | -14.22 | TAAACCCCAAAATCTCAGTGGCTTAACAC |
| MLT1J1 | ZSCAN16 | 261 | 278 | + | -16.98 | TGAAGATGGCAGAGCCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
