MLT1J1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001019 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 444 |
| Kimura value | 30.52 |
| Tau index | 0.9148 |
| Description | MLT1J1 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGGCTAGCTGTTCACCAAACCCGTTTCCTCTTCTTCCTGGGCACACAGCTAGACTACATTTCCCAGCCTCCCTTGCAGTTAGGTGTGGCCATGTGACTGAGTTCTGGCCAATGGAATGTGAGCAGAAGTGATGTGTGCCACTTCCAGGCCTGGCCCATAAAAACCTCCCATGCATNCTCCTCTCTATTCTCTCTTCCCTCTCTGCTGGCTGGATGTCGACGCCCAGGGCGACCTTGGAAGCCACGTGTTGAAGATGGCAGAGCCTCCGTCAGCCTGGGTCCCTGAATGACTGCGTGGAGCAGAGCCCCCCCCNACCCCCCCAGCACATCCAATTGGACTTTACGTGAGCGAGAAATAAACTTCTATTGTGTTAAGCCACTGAGATTTTGGGGTTTATCTGTTACAGCAGCTAGCGTTACCTTAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J1 | bHLH77 | 249 | 260 | + | 14.48 | GAAGCCACGTGT |
| MLT1J1 | GCR1 | 247 | 254 | + | 14.47 | TGGAAGCC |
| MLT1J1 | TEAD4 | 124 | 131 | - | 14.45 | ACATTCCA |
| MLT1J1 | Trl | 199 | 207 | - | 14.34 | AAGAGAGAA |
| MLT1J1 | Mnt | 253 | 259 | + | 14.31 | CCACGTG |
| MLT1J1 | ref-1 | 253 | 260 | - | 14.08 | ACACGTGG |
| MLT1J1 | DPBF3 | 251 | 261 | + | 14.01 | AGCCACGTGTT |
| MLT1J1 | ABF1 | 251 | 260 | - | 13.97 | ACACGTGGCT |
| MLT1J1 | MYB99 | 90 | 97 | - | 13.90 | CACCTAAC |
| MLT1J1 | MAX::MYC | 252 | 261 | - | 13.87 | AACACGTGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
