MLT1J
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001018 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 512 |
| Kimura value | 31.43 |
| Tau index | 0.7900 |
| Description | MLT1J Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGCTAGTTGTCCCCCAATATCCATTCTCCCCTTCTTCCTTAGTAATAGAACCCCCGATTTTTAGCTGGGCACATGGCCGCCCAGAATAAAGACTACATTTCCCAGCCTCCCTTGCAGCTAGGTGTGGCCATGTGACTAAGTTCTGGCCAATGGGATGTAAGCGGAAGTGNCGTGTGCAACTTCCGGGAAGTGTCCTTAAAGGGAGGGGGCGTGCCCTTCTTTTCCCCTTCCTCCTTCCTGCTGNCTGGAATGCGGACGTGATGGCTGGAGCTCNAGCAGCCATCTTGGACCATGAGGTGGAAGCCACGTGCTGAGGATGGCGGAGCAACAAGATAGAAGGAGCCTGGGTCCCTGATGACCGTGGAGCCGCCATACCAGCCCTGGACTGCCTACCTCCGGACTTCTTTTACGTGAGAGAGAAATAAACTTCTATCTTGTTTAAGCCACTGTTATTTTGGGTTTTCTGTTACTCGCAGCCGAACCTAATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J | PIF4 | 315 | 322 | - | 14.80 | CACGTGGC |
| MLT1J | ZIM3 | 471 | 481 | - | 14.78 | TAACAGAAAAC |
| MLT1J | ARF36 | 16 | 27 | - | 14.76 | GGGGGACAACTA |
| MLT1J | STAT3 | 193 | 201 | + | 14.76 | TTCCGGGAA |
| MLT1J | ELF4 | 190 | 201 | - | 14.72 | TTCCCGGAAGTT |
| MLT1J | PK24205.1 | 315 | 322 | - | 14.62 | CACGTGGC |
| MLT1J | ARF39 | 17 | 27 | - | 14.58 | GGGGGACAACT |
| MLT1J | PK18401.1 | 316 | 323 | - | 14.53 | GCACGTGG |
| MLT1J | Spps | 217 | 227 | - | 14.52 | GGCACGCCCCC |
| MLT1J | HEY2 | 315 | 323 | + | 14.52 | GCCACGTGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
