MLT1J
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001018 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 512 |
| Kimura value | 31.43 |
| Tau index | 0.7900 |
| Description | MLT1J Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGCTAGTTGTCCCCCAATATCCATTCTCCCCTTCTTCCTTAGTAATAGAACCCCCGATTTTTAGCTGGGCACATGGCCGCCCAGAATAAAGACTACATTTCCCAGCCTCCCTTGCAGCTAGGTGTGGCCATGTGACTAAGTTCTGGCCAATGGGATGTAAGCGGAAGTGNCGTGTGCAACTTCCGGGAAGTGTCCTTAAAGGGAGGGGGCGTGCCCTTCTTTTCCCCTTCCTCCTTCCTGCTGNCTGGAATGCGGACGTGATGGCTGGAGCTCNAGCAGCCATCTTGGACCATGAGGTGGAAGCCACGTGCTGAGGATGGCGGAGCAACAAGATAGAAGGAGCCTGGGTCCCTGATGACCGTGGAGCCGCCATACCAGCCCTGGACTGCCTACCTCCGGACTTCTTTTACGTGAGAGAGAAATAAACTTCTATCTTGTTTAAGCCACTGTTATTTTGGGTTTTCTGTTACTCGCAGCCGAACCTAATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J | Ets21C | 191 | 198 | - | 15.09 | CCGGAAGT |
| MLT1J | PK05451.1 | 316 | 323 | + | 15.05 | CCACGTGC |
| MLT1J | FEZF2 | 113 | 120 | + | 15.03 | CCCAGCCT |
| MLT1J | SP3 | 217 | 227 | - | 15.00 | GGCACGCCCCC |
| MLT1J | ETV7 | 173 | 181 | + | 15.00 | GCGGAAGTG |
| MLT1J | MYC | 316 | 323 | + | 14.93 | CCACGTGC |
| MLT1J | KLF16 | 217 | 227 | - | 14.90 | GGCACGCCCCC |
| MLT1J | HINFP | 264 | 271 | - | 14.89 | ACGTCCGC |
| MLT1J | GSM1 | 403 | 412 | + | 14.89 | TACCTCCGGA |
| MLT1J | Sp1 | 217 | 225 | - | 14.89 | CACGCCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
