MLT1J
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001018 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 512 |
| Kimura value | 31.43 |
| Tau index | 0.7900 |
| Description | MLT1J Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGCTAGTTGTCCCCCAATATCCATTCTCCCCTTCTTCCTTAGTAATAGAACCCCCGATTTTTAGCTGGGCACATGGCCGCCCAGAATAAAGACTACATTTCCCAGCCTCCCTTGCAGCTAGGTGTGGCCATGTGACTAAGTTCTGGCCAATGGGATGTAAGCGGAAGTGNCGTGTGCAACTTCCGGGAAGTGTCCTTAAAGGGAGGGGGCGTGCCCTTCTTTTCCCCTTCCTCCTTCCTGCTGNCTGGAATGCGGACGTGATGGCTGGAGCTCNAGCAGCCATCTTGGACCATGAGGTGGAAGCCACGTGCTGAGGATGGCGGAGCAACAAGATAGAAGGAGCCTGGGTCCCTGATGACCGTGGAGCCGCCATACCAGCCCTGGACTGCCTACCTCCGGACTTCTTTTACGTGAGAGAGAAATAAACTTCTATCTTGTTTAAGCCACTGTTATTTTGGGTTTTCTGTTACTCGCAGCCGAACCTAATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J | USF1 | 139 | 148 | + | 15.90 | GCCATGTGAC |
| MLT1J | STAT1 | 193 | 201 | + | 15.82 | TTCCGGGAA |
| MLT1J | CG3065 | 217 | 227 | - | 15.77 | GGCACGCCCCC |
| MLT1J | ETV6 | 173 | 181 | + | 15.77 | GCGGAAGTG |
| MLT1J | Zfp809 | 111 | 119 | + | 15.73 | TTCCCAGCC |
| MLT1J | NFYB | 157 | 165 | - | 15.68 | CCATTGGCC |
| MLT1J | Spi1 | 236 | 248 | - | 15.47 | AAGGAGGAAGGGG |
| MLT1J | PK09702.1 | 316 | 323 | - | 15.43 | GCACGTGG |
| MLT1J | BHLH72 | 315 | 323 | + | 15.26 | GCCACGTGC |
| MLT1J | Stat4 | 193 | 202 | + | 15.24 | TTCCGGGAAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
