MLT1H2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001131 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 489 |
| Kimura value | 25.76 |
| Tau index | 0.9179 |
| Description | MLT1H2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGACTGTTACATTGGTGGCCCCCAATGAACCACGCCTCCCGGTATTCACGCCCTTGTGTAGTCCCCTCCCACATTGACTCTGGGCTTGGCCATGTGACTTGCTTTGGCCAATGGGACATTAGCAAACGTGATGCAAGCAGAGGCTTGANAAGCGCTTGCGCATTGGGGCTTGTCCTCTTGGAACGCTCCCTCTTGGAANCCAGCTGCCATGCTGTGAAGAAGCCCAGGCTAGNCTGCTGGANGATGAGAGGCCACGTGGAGAGAGGCCCTGGAGGATGAGAGGCCATCTTGGACGTTCCAGCCCCAGCCGAGCTCCCAGCTGAATGCAGCCACATGAGTGACCCCAGCTANACCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCAGCCAACCCACAGAATCGTGAGAAATAATAAATCGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H2 | USF2 | 95 | 104 | + | 6.80 | GCCATGTGAC |
| MLT1H2 | TCP4 | 21 | 28 | - | 6.60 | GGGGCCAC |
| MLT1H2 | TFAP4::FLI1 | 323 | 336 | - | 6.12 | GCTGCATTCAGCTG |
| MLT1H2 | BEH2 | 257 | 266 | + | 3.86 | GCCACGTGGA |
| MLT1H2 | GLIS3 | 69 | 82 | + | 2.56 | CCCCTCCCACATTG |
| MLT1H2 | Rarg | 22 | 38 | - | -5.64 | TGGTTCATTGGGGGCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
