MLT1H2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001131 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 489 |
| Kimura value | 25.76 |
| Tau index | 0.9179 |
| Description | MLT1H2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGACTGTTACATTGGTGGCCCCCAATGAACCACGCCTCCCGGTATTCACGCCCTTGTGTAGTCCCCTCCCACATTGACTCTGGGCTTGGCCATGTGACTTGCTTTGGCCAATGGGACATTAGCAAACGTGATGCAAGCAGAGGCTTGANAAGCGCTTGCGCATTGGGGCTTGTCCTCTTGGAACGCTCCCTCTTGGAANCCAGCTGCCATGCTGTGAAGAAGCCCAGGCTAGNCTGCTGGANGATGAGAGGCCACGTGGAGAGAGGCCCTGGAGGATGAGAGGCCATCTTGGACGTTCCAGCCCCAGCCGAGCTCCCAGCTGAATGCAGCCACATGAGTGACCCCAGCTANACCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCAGCCAACCCACAGAATCGTGAGAAATAATAAATCGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H2 | Mnt | 258 | 264 | + | 14.31 | CCACGTG |
| MLT1H2 | Mnt | 259 | 265 | - | 14.31 | CCACGTG |
| MLT1H2 | Mnt | 359 | 365 | + | 14.31 | CCACGTG |
| MLT1H2 | Mnt | 360 | 366 | - | 14.31 | CCACGTG |
| MLT1H2 | SP9 | 36 | 45 | + | 14.31 | CCACGCCTCC |
| MLT1H2 | KLF11 | 36 | 45 | + | 14.29 | CCACGCCTCC |
| MLT1H2 | BHLH72 | 258 | 266 | - | 14.09 | TCCACGTGG |
| MLT1H2 | BHLH72 | 359 | 367 | - | 14.09 | TCCACGTGG |
| MLT1H2 | hkb | 52 | 60 | - | 14.04 | AGGGCGTGA |
| MLT1H2 | ZFP14 | 268 | 282 | + | 14.04 | AGAGGCCCTGGAGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
