MLT1H2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001131 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Eutheria |
| Length | 489 |
| Kimura value | 25.76 |
| Tau index | 0.9179 |
| Description | MLT1H2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGACTGTTACATTGGTGGCCCCCAATGAACCACGCCTCCCGGTATTCACGCCCTTGTGTAGTCCCCTCCCACATTGACTCTGGGCTTGGCCATGTGACTTGCTTTGGCCAATGGGACATTAGCAAACGTGATGCAAGCAGAGGCTTGANAAGCGCTTGCGCATTGGGGCTTGTCCTCTTGGAACGCTCCCTCTTGGAANCCAGCTGCCATGCTGTGAAGAAGCCCAGGCTAGNCTGCTGGANGATGAGAGGCCACGTGGAGAGAGGCCCTGGAGGATGAGAGGCCATCTTGGACGTTCCAGCCCCAGCCGAGCTCCCAGCTGAATGCAGCCACATGAGTGACCCCAGCTANACCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCAGCCAACCCACAGAATCGTGAGAAATAATAAATCGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H2 | mxl-3 | 258 | 265 | - | 14.59 | CCACGTGG |
| MLT1H2 | mxl-3 | 359 | 366 | + | 14.59 | CCACGTGG |
| MLT1H2 | mxl-3 | 359 | 366 | - | 14.59 | CCACGTGG |
| MLT1H2 | phol | 288 | 297 | + | 14.54 | GGCCATCTTG |
| MLT1H2 | ci | 393 | 403 | + | 14.51 | AGCCAACCCAC |
| MLT1H2 | BAS1 | 80 | 91 | - | 14.49 | GCCCAGAGTCAA |
| MLT1H2 | mxl-1 | 258 | 265 | + | 14.33 | CCACGTGG |
| MLT1H2 | mxl-1 | 258 | 265 | - | 14.33 | CCACGTGG |
| MLT1H2 | mxl-1 | 359 | 366 | + | 14.33 | CCACGTGG |
| MLT1H2 | mxl-1 | 359 | 366 | - | 14.33 | CCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
