MLT1H2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001131 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 489 |
| Kimura value | 25.76 |
| Tau index | 0.9179 |
| Description | MLT1H2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGACTGTTACATTGGTGGCCCCCAATGAACCACGCCTCCCGGTATTCACGCCCTTGTGTAGTCCCCTCCCACATTGACTCTGGGCTTGGCCATGTGACTTGCTTTGGCCAATGGGACATTAGCAAACGTGATGCAAGCAGAGGCTTGANAAGCGCTTGCGCATTGGGGCTTGTCCTCTTGGAACGCTCCCTCTTGGAANCCAGCTGCCATGCTGTGAAGAAGCCCAGGCTAGNCTGCTGGANGATGAGAGGCCACGTGGAGAGAGGCCCTGGAGGATGAGAGGCCATCTTGGACGTTCCAGCCCCAGCCGAGCTCCCAGCTGAATGCAGCCACATGAGTGACCCCAGCTANACCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCAGCCAACCCACAGAATCGTGAGAAATAATAAATCGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H2 | MYCN | 359 | 366 | + | 15.35 | CCACGTGG |
| MLT1H2 | MYCN | 359 | 366 | - | 15.35 | CCACGTGG |
| MLT1H2 | MAX::MYC | 358 | 367 | + | 15.29 | ACCACGTGGA |
| MLT1H2 | Creb3l2 | 257 | 265 | + | 15.25 | GCCACGTGG |
| MLT1H2 | dm | 358 | 365 | + | 15.13 | ACCACGTG |
| MLT1H2 | Max | 358 | 365 | + | 15.13 | ACCACGTG |
| MLT1H2 | SP3 | 35 | 45 | + | 15.06 | ACCACGCCTCC |
| MLT1H2 | PIF4 | 257 | 264 | - | 14.80 | CACGTGGC |
| MLT1H2 | PK24205.1 | 257 | 264 | - | 14.62 | CACGTGGC |
| MLT1H2 | mxl-3 | 258 | 265 | + | 14.59 | CCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
