MLT1H
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001014 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 549 |
| Kimura value | 27.41 |
| Tau index | 0.8986 |
| Description | MLT1H Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1H has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGATTGATTGCAAAAATGGCCNCAATTCTTCACCCCTCCCTGTATCCACGCCCTTTGCAATGTGACTTTGCAGCTCCTCCCATCAAGAGGTGGAGTCTATTTCCCCACCCCTTGAATCTGGGCTGGCCTTGTGACTTGCTTTGGCCAATAGAATGCGGCGGAAGTGACGNTGTGCCAGTTCCGAGCCTAGGCCTCAAGAGGCCTTGCACGCTTCCGCTCTCTCTCTTGGAACCCTGCCACCGCCATGTGAACAAGCCCGGGCTAGCCTGCTGGAGGATGAGAGACCACGTGGAGCAGAGCCGAGCCGTCCCAGCTGAGGCCATCCTAGACCAGCCAGCCCCCAGCCAAGATCAGCAGAGCCGCCTACCCGACCCGCAGCTGACCGCAGACGCATGAGTGAGCCCAGCCGAGACCAGAAGAACCGCCCAGCTGAGCCCAGCCCAAATTGCCGACCCACAGAATCGTGAGCTAAAATAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H | dar1 | 38 | 48 | + | 5.97 | ACCCCTCCCTG |
| MLT1H | ZNF343 | 214 | 229 | + | 5.49 | ACGCTTCCGCTCTCTC |
| MLT1H | RARA | 375 | 391 | - | 4.26 | CGGTCAGCTGCGGGTCG |
| MLT1H | Zm00001d020595 | 241 | 250 | - | 3.38 | GGCGGTGGCA |
| MLT1H | TP63 | 256 | 273 | + | 3.19 | AACAAGCCCGGGCTAGCC |
| MLT1H | TFAP4::FLI1 | 309 | 322 | + | 2.76 | AGCCGTCCCAGCTG |
| MLT1H | BPC1 | 210 | 233 | - | 2.12 | AAGAGAGAGAGCGGAAGCGTGCAA |
| MLT1H | Rarg | 130 | 144 | - | -2.74 | CAAGTCACAAGGCCA |
| MLT1H | TP63 | 256 | 273 | - | -2.79 | GGCTAGCCCGGGCTTGTT |
| MLT1H | EWSR1-FLI1 | 29 | 46 | - | -11.89 | GGGAGGGGTGAAGAATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
